PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016498824.1
Organism
Nicotiana tabacum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family WRKY
Protein Properties Length: 727aa    MW: 79052.8 Da    PI: 6.4395
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016498824.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY103.89.6e-33310367260
                     --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS-- CS
            WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhek 60 
                     +DgynWrKYGqK+vkgse+prsYY+Ct+++Cpvkkkvers+ +++++ei+Y+g Hnh+k
  XP_016498824.1 310 EDGYNWRKYGQKQVKGSEYPRSYYKCTHPNCPVKKKVERSH-EGHITEIIYKGAHNHPK 367
                     8****************************************.***************85 PP
2WRKY104.27.3e-33524582159
                     ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
            WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                     ldDgy+WrKYGqK+vkg+++prsYY+CtsagC+v+k+ver+++d k v++tYeg+Hnh+
  XP_016498824.1 524 LDDGYRWRKYGQKVVKGNPNPRSYYKCTSAGCNVRKHVERASHDLKSVITTYEGKHNHD 582
                     59********************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.804.2E-29307368IPR003657WRKY domain
SuperFamilySSF1182909.15E-26308368IPR003657WRKY domain
SMARTSM007749.0E-37309367IPR003657WRKY domain
PfamPF031062.9E-25310366IPR003657WRKY domain
PROSITE profilePS5081123.399310368IPR003657WRKY domain
Gene3DG3DSA:2.20.25.803.3E-37509584IPR003657WRKY domain
SuperFamilySSF1182901.44E-28516584IPR003657WRKY domain
PROSITE profilePS5081138.733519584IPR003657WRKY domain
SMARTSM007746.6E-38524583IPR003657WRKY domain
PfamPF031065.0E-25525582IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009555Biological Processpollen development
GO:0009942Biological Processlongitudinal axis specification
GO:0030010Biological Processestablishment of cell polarity
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 727 aa     Download sequence    Send to blast
MGGFDDHAAI MGDWMPPSPS PRTFFSSLLG DDIGSRSTFE FPNENKRGNL ASEPQEHVGN  60
SDGAQTDAMT VKSDQKMSSR GGLLERMAAR AGFNAPKLNT ESLRPADLSQ NQGVRSPYLT  120
IPPGLSPTSL LESPVFLSNS LVQPSPTTGK FQFASGIESR NSTFMMEDPD KRKENALESI  180
NSSSFSFKPV PETASSLFPG ATSRVNSSNI SQQCFPNIKV SVHSQNSLLS HCMEATQMQN  240
QNEKGLNQSS DFPRFSAEKD VRDSNVTPDS TNFQTVGSNV EHSPPLDEPQ DEEIDQRVGG  300
DPNVVGAPAE DGYNWRKYGQ KQVKGSEYPR SYYKCTHPNC PVKKKVERSH EGHITEIIYK  360
GAHNHPKPPP NRRSALGSTN SLGELQLDGA EQGVSGSNGD LGRANIQKAP DAGGLDWRNN  420
NLDVTSSAHL GSAYCNGSAS FPVQNNTQLE SGGAVDVSST FSNDEDEDDR GTHGSVSQGY  480
DGEGDESESK RRKLETYSTD MSGATRAIRE PRVVVQTTSE VDILDDGYRW RKYGQKVVKG  540
NPNPRSYYKC TSAGCNVRKH VERASHDLKS VITTYEGKHN HDVPAARNSS HVNSGTSNTL  600
PAPVTAPPAQ SHLHRPEPAQ LQNAMARFDR QPSLGSFGPS PGFSYGMNQQ SLASLAMAGF  660
HPNQSKSQQQ VPVHSYLGQP RPMHDGGFMF PKEEPKAEPM SDPGLDLSNG SSIYQQFMSR  720
LPLGPQM
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A7e-37310585878Probable WRKY transcription factor 4
2lex_A7e-37310585878Probable WRKY transcription factor 4
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Regulates WOX8 and WOX9 expression and basal cell division patterns during early embryogenesis. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element. Required to repolarize the zygote from a transient symmetric state. {ECO:0000269|PubMed:21316593}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00071PBMTransfer from AT5G56270Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB0635760.0AB063576.1 Nicotiana tabacum NtWRKY-9 mRNA for WRKY DNA-binding protein, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016498824.10.0PREDICTED: probable WRKY transcription factor 2 isoform X4
SwissprotQ9FG770.0WRKY2_ARATH; Probable WRKY transcription factor 2
TrEMBLA0A1S4CCX50.0A0A1S4CCX5_TOBAC; probable WRKY transcription factor 2 isoform X4
STRINGXP_009769736.10.0(Nicotiana sylvestris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G56270.11e-171WRKY DNA-binding protein 2
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Ueda M, et al.
    Transcriptional integration of paternal and maternal factors in the Arabidopsis zygote.
    Genes Dev., 2017. 31(6): p. 617-627
    [PMID:28404632]
  4. Lei R, et al.
    Arabidopsis WRKY2 and WRKY34 transcription factors interact with VQ20 protein to modulate pollen development and function.
    Plant J., 2017. 91(6): p. 962-976
    [PMID:28635025]