PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016498258.1
Organism
Nicotiana tabacum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family G2-like
Protein Properties Length: 317aa    MW: 34301.2 Da    PI: 6.1738
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016498258.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like97.97.1e-31248300153
         G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkY 53 
                     k r+rWtpeLHe Fveav++LGGsekAtPk +l+lm+v+gLt++hvkSHLQ Y
  XP_016498258.1 248 KSRMRWTPELHEVFVEAVSKLGGSEKATPKGVLKLMNVEGLTIYHVKSHLQDY 300
                     68*************************************************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129411.752245305IPR017930Myb domain
SuperFamilySSF466892.33E-16246300IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.3E-27247300IPR009057Homeodomain-like
TIGRFAMsTIGR015573.5E-23248300IPR006447Myb domain, plants
PfamPF002491.6E-9250300IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 317 aa     Download sequence    Send to blast
MNMRRALCIQ RSSEAQHNNM GISGAMSTSL SILPSSEEKY LKLPDSLHVL TEKEQSINLI  60
SSRAIPSASN GGTVGHLLSS TSGPHKDIHF SPTSSQESRP RSYPFISSEV SATTCQSSLS  120
SLCSASLDNY PMRNNNNSWS KDAYHDSTDF PTNVSVQNGQ VENLPVVMAS DDQTKRPDWQ  180
EWADQLINDD ALGSSWIEHL VDVNLLDPEP KLLGASEVLA FQPQPPPIAP SGQSCPVGSP  240
SSSTALTKSR MRWTPELHEV FVEAVSKLGG SEKATPKGVL KLMNVEGLTI YHVKSHLQDY  300
GDNRSAKNAN GSPKAAS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4k_A1e-26248304258Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B1e-26248304258Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A1e-26248304258Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C1e-26248304258Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D1e-26248304258Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F1e-26248304258Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H1e-26248304258Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J1e-26248304258Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2383420.0AC238342.1 Solanum tuberosum cultivar RH89-039-16 chromosome 5 clone RH170O21, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016498258.10.0PREDICTED: protein PHR1-LIKE 1-like isoform X2
TrEMBLA0A1S4CAU20.0A0A1S4CAU2_TOBAC; protein PHR1-LIKE 1-like isoform X2
STRINGXP_009591732.10.0(Nicotiana tomentosiformis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G04450.15e-45G2-like family protein