PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_016497270.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | WRKY | ||||||||
Protein Properties | Length: 221aa MW: 24825 Da PI: 9.0904 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 102.2 | 3e-32 | 164 | 221 | 1 | 58 |
---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnh 58 ldDg++WrKYGqK vk+s+fprsYYrCt+a+C vkk+vers+ed+++v++tYeg H h XP_016497270.1 164 LDDGFRWRKYGQKAVKNSPFPRSYYRCTTATCGVKKRVERSSEDTSIVVTTYEGWHSH 221 59******************************************************99 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 1.8E-32 | 149 | 221 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 8.89E-28 | 156 | 221 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 29.631 | 159 | 221 | IPR003657 | WRKY domain |
SMART | SM00774 | 4.4E-33 | 164 | 221 | IPR003657 | WRKY domain |
Pfam | PF03106 | 4.3E-25 | 165 | 221 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 221 aa Download sequence Send to blast |
MLLIKSMADK ENKLKPDTSS LEISTFSDQI PASTYSLFDM PTCETEKGSS LSLMFSSHPI 60 TTPSIFDLLQ PPPPPPVPLL VPSQLKIVNK IPSSEIVNTP NSSSISSSST EAAANDDQLQ 120 ATTKTVDDDD EHKNKKQLKP KKKNQKRQRE PRFAFMTKSE VDHLDDGFRW RKYGQKAVKN 180 SPFPRSYYRC TTATCGVKKR VERSSEDTSI VVTTYEGWHS H |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wj2_A | 5e-28 | 154 | 221 | 7 | 74 | Probable WRKY transcription factor 4 |
2lex_A | 5e-28 | 154 | 221 | 7 | 74 | Probable WRKY transcription factor 4 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016497270.1 | 1e-163 | PREDICTED: probable WRKY transcription factor 48 isoform X6 | ||||
TrEMBL | A0A1S4C807 | 1e-162 | A0A1S4C807_TOBAC; probable WRKY transcription factor 48 isoform X6 | ||||
STRING | XP_009626377.1 | 1e-155 | (Nicotiana tomentosiformis) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G47260.1 | 9e-42 | WRKY DNA-binding protein 23 |