PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016497219.1
Organism
Nicotiana tabacum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family WRKY
Protein Properties Length: 453aa    MW: 50716.4 Da    PI: 7.6276
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016497219.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY94.57.7e-30208266259
                     --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
            WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                     +Dg++WrKYGqK  kg+++pr+YYrCt + +Cpv+k+v+r+ ed +++++tYeg+Hnh+
  XP_016497219.1 208 HDGCQWRKYGQKIAKGNPCPRAYYRCTVSpSCPVRKQVQRCFEDMSILITTYEGTHNHP 266
                     7**************************999****************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.1E-30192266IPR003657WRKY domain
SuperFamilySSF1182907.98E-27200267IPR003657WRKY domain
PROSITE profilePS5081127.267202268IPR003657WRKY domain
SMARTSM007749.3E-36207267IPR003657WRKY domain
PfamPF031064.2E-26209266IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 453 aa     Download sequence    Send to blast
MLRKYSAMDS TTSIYDKEQV LLVSTKKEDK LNSTKAQIDE AKQENERLKS MLSKTIKDYQ  60
SLQMHFQGIS QNSKDIIATS IEQEQVELVS LSLGRSSREF KQDEKEYDQN ECKDIKKQSK  120
LFDGLELGLN YRCSPDFTEV TKHYDDSPEN SFEESKKEHI ISEPCIQNYP SSKMSRICGD  180
EDEDFLQQNP QKKARVSIRA VCDTTTMHDG CQWRKYGQKI AKGNPCPRAY YRCTVSPSCP  240
VRKQVQRCFE DMSILITTYE GTHNHPLSFS ATAMASTTSA AASMLSCTSS STSQQGIINA  300
NTNNNVHVFN FTTSNTNLLA THAPNTFYVP RTSISTSQTH PTITLDFTTV PTTTSSSTNT  360
FSSQRYSSTS LNFSTLPSTL PSSSFINSYT PLCNNFKSQT GAASYLGRPC FSQPFTSNNT  420
QNMTVEESGG ARNSINWIQK NTKVSHLGFD PVT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A2e-18198267876Probable WRKY transcription factor 4
2ayd_A1e-18199267273WRKY transcription factor 1
2lex_A2e-18198267876Probable WRKY transcription factor 4
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016497219.10.0PREDICTED: probable WRKY transcription factor 72 isoform X2
TrEMBLA0A1S4C8D50.0A0A1S4C8D5_TOBAC; probable WRKY transcription factor 72 isoform X2
STRINGXP_009599235.10.0(Nicotiana tomentosiformis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G18860.11e-55WRKY DNA-binding protein 61