PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_016497218.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | WRKY | ||||||||
Protein Properties | Length: 476aa MW: 53302.2 Da PI: 7.8127 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 94.4 | 8.2e-30 | 231 | 289 | 2 | 59 |
--SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 +Dg++WrKYGqK kg+++pr+YYrCt + +Cpv+k+v+r+ ed +++++tYeg+Hnh+ XP_016497218.1 231 HDGCQWRKYGQKIAKGNPCPRAYYRCTVSpSCPVRKQVQRCFEDMSILITTYEGTHNHP 289 7**************************999****************************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 1.2E-30 | 215 | 289 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 8.63E-27 | 223 | 290 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 27.267 | 225 | 291 | IPR003657 | WRKY domain |
SMART | SM00774 | 9.3E-36 | 230 | 290 | IPR003657 | WRKY domain |
Pfam | PF03106 | 4.5E-26 | 232 | 289 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 476 aa Download sequence Send to blast |
MLRKYSAMDS TTSIYDKEQV LLVSTKKATL TTTMNTNSRD SSLNYKKNDQ EDKLNSTKAQ 60 IDEAKQENER LKSMLSKTIK DYQSLQMHFQ GISQNSKDII ATSIEQEQVE LVSLSLGRSS 120 REFKQDEKEY DQNECKDIKK QSKLFDGLEL GLNYRCSPDF TEVTKHYDDS PENSFEESKK 180 EHIISEPCIQ NYPSSKMSRI CGDEDEDFLQ QNPQKKARVS IRAVCDTTTM HDGCQWRKYG 240 QKIAKGNPCP RAYYRCTVSP SCPVRKQVQR CFEDMSILIT TYEGTHNHPL SFSATAMAST 300 TSAAASMLSC TSSSTSQQGI INANTNNNVH VFNFTTSNTN LLATHAPNTF YVPRTSISTS 360 QTHPTITLDF TTVPTTTSSS TNTFSSQRYS STSLNFSTLP STLPSSSFIN SYTPLCNNFK 420 SQTGAASYLG RPCFSQPFTS NNTQNMTVEE SGGARNSINW IQKNTKVSHL GFDPVT |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2ayd_A | 2e-18 | 222 | 290 | 2 | 73 | WRKY transcription factor 1 |
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Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016497218.1 | 0.0 | PREDICTED: probable WRKY transcription factor 72 isoform X1 | ||||
TrEMBL | A0A1S4C7U5 | 0.0 | A0A1S4C7U5_TOBAC; probable WRKY transcription factor 72 isoform X1 | ||||
STRING | XP_009599235.1 | 0.0 | (Nicotiana tomentosiformis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA1945 | 24 | 64 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G18860.1 | 3e-55 | WRKY DNA-binding protein 61 |