PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_016496933.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | bHLH | ||||||||
Protein Properties | Length: 180aa MW: 20412.6 Da PI: 10.441 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 18.8 | 2.9e-06 | 17 | 65 | 6 | 53 |
HHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-.STCHHHHHHHHHHHHH CS HLH 6 nerErrRRdriNsafeeLrellPk.askapskK.lsKaeiLekAveYIks 53 + +Er+RR +++ +eL +P+ + psk l + L +A+ YIk+ XP_016496933.1 17 KTVERNRRIHMKYLCSELIFRIPPqHF-KPSKHmLPQQDQLDQATTYIKK 65 679*********************666.555556**************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:4.10.280.10 | 1.4E-6 | 16 | 79 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 6.54E-7 | 17 | 81 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 180 aa Download sequence Send to blast |
METTSPSKVS SEKPDRKTVE RNRRIHMKYL CSELIFRIPP QHFKPSKHML PQQDQLDQAT 60 TYIKKVREKV ETLKRKIQIA RGTRESNSPK TSMSTSIKSP VIEVKELGPS LEVILISGLT 120 KNFTLYEVIS IAEEEGAEVV SANFSTFGNN VFHTIHAQVK VTRLGMDASR IYGRLQKLVG |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016496933.1 | 1e-130 | PREDICTED: uncharacterized protein LOC107815812 | ||||
TrEMBL | A0A1S4C717 | 1e-129 | A0A1S4C717_TOBAC; uncharacterized protein LOC107815812 | ||||
STRING | XP_009618665.1 | 3e-74 | (Nicotiana tomentosiformis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA6083 | 14 | 23 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G20970.1 | 2e-24 | bHLH family protein |