PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_016496679.1

Organism

Nicotiana tabacum

Taxonomic ID

4097

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

HD-ZIP

Protein Properties

Length: 272aa MW: 30464.2 Da PI: 8.5716

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_016496679.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	57.9	1.7e-18	128	182	2	56
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 rk+ ++tk q Lee F+++++++ ++++eLA++l+L rqV vWFqNrRa+ k XP_016496679.1 128 RKKLRLTKAQSALLEESFKQHSTLNPKQKQELARNLNLRPRQVEVWFQNRRARTK 182 788899***********************************************98 PP
2	HD-ZIP_I/II	124.2	6.1e-40	128	216	1	90
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLree 90 +kk+rl+k q++lLEesF+++++L+p++K+elar+L+l+prqv+vWFqnrRARtk+kq+E+d+e+Lk+++++l+een+rL+ke +eL+ + XP_016496679.1 128 RKKLRLTKAQSALLEESFKQHSTLNPKQKQELARNLNLRPRQVEVWFQNRRARTKLKQTEVDCEFLKKCCETLTEENRRLHKELQELK-A 216 69*************************************************************************************9.4 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	6.68E-19	115	185	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	6.6E-18	121	187	IPR009057	Homeodomain-like
PROSITE profile	PS50071	17.702	124	184	IPR001356	Homeobox domain
SMART	SM00389	1.6E-15	126	188	IPR001356	Homeobox domain
CDD	cd00086	4.91E-16	128	185	No hit	No description
Pfam	PF00046	5.4E-16	128	182	IPR001356	Homeobox domain
PROSITE pattern	PS00027	0	159	182	IPR017970	Homeobox, conserved site
SMART	SM00340	5.0E-24	184	227	IPR003106	Leucine zipper, homeobox-associated
Pfam	PF02183	7.4E-11	184	217	IPR003106	Leucine zipper, homeobox-associated

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0009735	Biological Process	response to cytokinin
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 272 aa Download sequence Send to blast
MGSFDDISST GLVLGLGFST TADQKSTKIA PVVLDKGPSL SFEPSLRLSL SGDHTYEKQE 60 AVKKVNNVTR GPNDHQSVDL YRQDSAASSY SNASVKRERD VGSEETTTEV ERLSSRVSDE 120 DDDGSNARKK LRLTKAQSAL LEESFKQHST LNPKQKQELA RNLNLRPRQV EVWFQNRRAR 180 TKLKQTEVDC EFLKKCCETL TEENRRLHKE LQELKAVKIA QPLYMQLPAA TLTMCPSCER 240 IGGVGENPSK NPFTLAQKPY FYNSFTNPSA AC

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	176	184	RRARTKLKQ

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. {ECO:0000250}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00477	DAP	Transfer from AT4G37790	Download

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	EU998971	0.0	EU998971.1 Nicotiana benthamiana homeodomain leucine-zipper 1 (HB1) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009592889.1	0.0	PREDICTED: homeobox-leucine zipper protein HAT22-like
Refseq	XP_016496679.1	0.0	PREDICTED: homeobox-leucine zipper protein HAT22-like
Swissprot	P46604	7e-91	HAT22_ARATH; Homeobox-leucine zipper protein HAT22
TrEMBL	A0A1S4C6W9	0.0	A0A1S4C6W9_TOBAC; homeobox-leucine zipper protein HAT22-like
STRING	XP_009592889.1	0.0	(Nicotiana tomentosiformis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA290	24	186

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G37790.1	3e-93	HD-ZIP family protein

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Liu T,Longhurst AD,Talavera-Rauh F,Hokin SA,Barton MK The Arabidopsis transcription factor ABIG1 relays ABA signaled growth inhibition and drought induced senescence. Elife, 2017. [PMID:27697148] Song L, et al. A transcription factor hierarchy defines an environmental stress response network. Science, 2017. [PMID:27811239]