PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016496095.1
Organism
Nicotiana tabacum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family MIKC_MADS
Protein Properties Length: 245aa    MW: 28403.9 Da    PI: 9.024
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016496095.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF94.16.2e-30959151
                    S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
          SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                    krienk+nrqvtfskRr g+lKKA+E+SvLCdaev +i+fs++gkl+eys+
  XP_016496095.1  9 KRIENKINRQVTFSKRRSGLLKKAHEISVLCDAEVGLIVFSTKGKLFEYST 59
                    79***********************************************96 PP
2K-box1081.1e-35761742100
           K-box   2 qkssgksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrk 96 
                     ++++ +++++++  s++ e+akLk+++e Lqr+qRh+ GedL+sLs+keLq+Le+qL+++lk+iRs+Kn+l++e+i+elqkk k+lqe+n++L+k
  XP_016496095.1  76 AERQLTATDHETPGSWTLEHAKLKARLEVLQRNQRHYAGEDLDSLSMKELQNLEHQLDSALKHIRSRKNQLMHESISELQKKDKALQEQNNNLSK 170
                     66777788888899********************************************************************************* PP

           K-box  97 klee 100
                     +++e
  XP_016496095.1 171 QVKE 174
                     *986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004321.9E-39160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006632.184161IPR002100Transcription factor, MADS-box
SuperFamilySSF554553.66E-34290IPR002100Transcription factor, MADS-box
CDDcd002651.13E-41279No hitNo description
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PRINTSPR004045.5E-31323IPR002100Transcription factor, MADS-box
PfamPF003196.6E-251057IPR002100Transcription factor, MADS-box
PRINTSPR004045.5E-312338IPR002100Transcription factor, MADS-box
PRINTSPR004045.5E-313859IPR002100Transcription factor, MADS-box
PfamPF014861.5E-2987172IPR002487Transcription factor, K-box
PROSITE profilePS5129716.8488178IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010077Biological Processmaintenance of inflorescence meristem identity
GO:0010154Biological Processfruit development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 245 aa     Download sequence    Send to blast
MGRGRVQLKR IENKINRQVT FSKRRSGLLK KAHEISVLCD AEVGLIVFST KGKLFEYSTD  60
SCMERILERY ERYSYAERQL TATDHETPGS WTLEHAKLKA RLEVLQRNQR HYAGEDLDSL  120
SMKELQNLEH QLDSALKHIR SRKNQLMHES ISELQKKDKA LQEQNNNLSK QVKEREKELA  180
QQTQWEQQSH DHLNSSSFVL TQPLSSLHLG EAYPTAGDNG EVEGSSRQQQ QNTVMPPWML  240
RHLNG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1tqe_P2e-22184183Myocyte-specific enhancer factor 2B
1tqe_Q2e-22184183Myocyte-specific enhancer factor 2B
1tqe_R2e-22184183Myocyte-specific enhancer factor 2B
1tqe_S2e-22184183Myocyte-specific enhancer factor 2B
6byy_A2e-22184183MEF2 CHIMERA
6byy_B2e-22184183MEF2 CHIMERA
6byy_C2e-22184183MEF2 CHIMERA
6byy_D2e-22184183MEF2 CHIMERA
6c9l_A2e-22184183Myocyte-specific enhancer factor 2B
6c9l_B2e-22184183Myocyte-specific enhancer factor 2B
6c9l_C2e-22184183Myocyte-specific enhancer factor 2B
6c9l_D2e-22184183Myocyte-specific enhancer factor 2B
6c9l_E2e-22184183Myocyte-specific enhancer factor 2B
6c9l_F2e-22184183Myocyte-specific enhancer factor 2B
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF0687250.0AF068725.1 Nicotiana sylvestris MADS-box protein MADS1 (NsMADS1) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001289508.11e-180agamous-like MADS-box protein AGL8 homolog
SwissprotQ424291e-148AGL8_SOLTU; Agamous-like MADS-box protein AGL8 homolog
TrEMBLA0A1S4C4N30.0A0A1S4C4N3_TOBAC; agamous-like MADS-box protein AGL8 homolog
TrEMBLA0A1U7XR240.0A0A1U7XR24_NICSY; agamous-like MADS-box protein AGL8 homolog
STRINGXP_009792071.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA4992397
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60910.11e-110AGAMOUS-like 8
Publications ? help Back to Top
  1. Kang SG,Hannapel DJ
    Nucleotide sequences of novel potato (Solanum tuberosum L.) MADS-box cDNAs and their expression in vegetative organs.
    Gene, 1995. 166(2): p. 329-30
    [PMID:8543185]