PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016495394.1
Organism
Nicotiana tabacum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family Nin-like
Protein Properties Length: 294aa    MW: 32269.9 Da    PI: 6.3535
Description Nin-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016495394.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1RWP-RK42.71.1e-13178218444
          RWP-RK   4 eisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRW 44 
                     +i+l+dl+++F ++  dAA +Lgv++++ Kr CR +GI+ W
  XP_016495394.1 178 RITLSDLQQQFGKKRSDAAESLGVSPSTFKRCCRANGIAKW 218
                     69*************************************** PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5151910.671161249IPR003035RWP-RK domain
PfamPF020425.3E-14179218IPR003035RWP-RK domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 294 aa     Download sequence    Send to blast
MGTVLVILSI FTMLTVAYVA AAKITAEESD FSPSPAPAVG MDAGAGFQLT QSRAILLSCL  60
VLCYHYLTDS LFANPDPDSF AAFDADSDQN LFADIINTSL QEDCFPSEMG LNNQILVGID  120
VPLTSSVLLH SEKRGEITTE PPLQDKQMQS VHVNETTVLH RNYSRQRASK SKEKDYCRIT  180
LSDLQQQFGK KRSDAAESLG VSPSTFKRCC RANGIAKWSC KLKVQPHTTQ RVVESMATFQ  240
SDNTMSIKVS YNGVKVRFPL ILSSGKNDLE AEVETRFGIQ IKLLIQMLVA SSGI
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016495394.10.0PREDICTED: uncharacterized protein LOC107814477 isoform X2
TrEMBLA0A1S4C2U90.0A0A1S4C2U9_TOBAC; uncharacterized protein LOC107814477 isoform X2
STRINGXP_009770811.10.0(Nicotiana sylvestris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38340.13e-10Nin-like family protein