PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016494823.1
Organism
Nicotiana tabacum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family HD-ZIP
Protein Properties Length: 833aa    MW: 92310.7 Da    PI: 5.0252
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016494823.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox63.23.9e-2099154156
                     TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
        Homeobox   1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                     +++ +++t+ q++e+e+lF+++++p+ ++r +L++ lgL+ rqVk+WFqNrR+++k
  XP_016494823.1  99 KKRYHRHTARQIQEMEALFKECPHPDDKQRLKLSQDLGLKPRQVKFWFQNRRTQMK 154
                     688899***********************************************998 PP
2START156.62e-493005261206
                     HHHHHHHHHHHHHHHHC-TT-EEEE....EXCCTTEEEEEEESSS..............SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S. CS
           START   1 elaeeaaqelvkkalaeepgWvkss....esengdevlqkfeeskv.............dsgealrasgvvdmvlallveellddkeqWdetla. 77 
                     ela++ ++elvk+ +a++p+W +      e++n +e+ +                     ++ea r s+vv+m++ +lv  lld + +W e ++ 
  XP_016494823.1 300 ELALSSMDELVKMCQAADPLWIRATdsgkEILNVEEYSR------MspwpvgikqnsneLRIEATRSSAVVIMNSITLVDALLDAN-KWIELFPs 387
                     578999*****************9966665555444433......23333456888889***************************.******** PP

                     ...EEEEEEEECTT......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE..TTS-EEEEEEEEE-TTS--.-TTSEE-EESSEEEEEEEECTCE CS
           START  78 ...kaetlevissg......galqlmvaelqalsplvp.RdfvfvRyirq.lgagdwvivdvSvdseqkppesssvvRaellpSgiliepksngh 161
                        +a+t++v++sg      g lqlm++e+qal+plvp R+ +f+Ry++q  ++g+w+ivd  +ds  ++   +++   +++pSg++i++++ng+
  XP_016494823.1 388 iisRAKTIQVVTSGvsghasGSLQLMFMEMQALTPLVPtRECYFLRYCQQnVEEGTWAIVDFPLDSLHNNF-PAPFPYFKRRPSGCIIQDMPNGY 481
                     **************************************************99**************99998.58888888*************** PP

                     EEEEEEE-EE--SSXXHHHHHHHHHHHHHHHHHHHHHHTXXXXXX CS
           START 162 skvtwvehvdlkgrlphwllrslvksglaegaktwvatlqrqcek 206
                     s+vtwve+++++++ + +++++ v+sg+a+ga++w+  lqrqce+
  XP_016494823.1 482 SRVTWVEQAEVEENPVNQIFNQYVSSGMAFGAQRWLGILQRQCER 526
                     *******************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.9E-2085154IPR009057Homeodomain-like
SuperFamilySSF466891.13E-1888157IPR009057Homeodomain-like
PROSITE profilePS5007116.74696156IPR001356Homeobox domain
SMARTSM003895.8E-1997160IPR001356Homeobox domain
CDDcd000865.48E-1899157No hitNo description
PfamPF000461.1E-1799154IPR001356Homeobox domain
PROSITE patternPS000270131154IPR017970Homeobox, conserved site
PROSITE profilePS5084842.858291529IPR002913START domain
SuperFamilySSF559614.26E-33292528No hitNo description
CDDcd088752.99E-114295525No hitNo description
Gene3DG3DSA:3.70.10.104.1E-4295410No hitNo description
PfamPF018528.7E-42300526IPR002913START domain
SMARTSM002342.2E-33300526IPR002913START domain
SuperFamilySSF559612.47E-17552722No hitNo description
SuperFamilySSF559612.47E-17755794No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0048497Biological Processmaintenance of floral organ identity
GO:0008289Molecular Functionlipid binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 833 aa     Download sequence    Send to blast
MFGDCQLFSS MGMGGNAVSS DSLYSSPIQN PNFNFMAMGG NNLPFNIFPP NIIPKEENGL  60
LKSKEEMDSG SGSEHIEGMS GNELETEQHQ QQQQQPGKKK RYHRHTARQI QEMEALFKEC  120
PHPDDKQRLK LSQDLGLKPR QVKFWFQNRR TQMKAQQDRA DNVILRAEND NLKNENYRLQ  180
AALRSIMCPS CGGPAMLGEM GYDEQQLRLE NARLKEEFER VCCLVSQYNG RGPMQGIGPT  240
TPLLPPSLEL DMSINFSRKF EEPMANCSTE MVSVPFIPEN NSQFSGGPII LEEEKSTAME  300
LALSSMDELV KMCQAADPLW IRATDSGKEI LNVEEYSRMS PWPVGIKQNS NELRIEATRS  360
SAVVIMNSIT LVDALLDANK WIELFPSIIS RAKTIQVVTS GVSGHASGSL QLMFMEMQAL  420
TPLVPTRECY FLRYCQQNVE EGTWAIVDFP LDSLHNNFPA PFPYFKRRPS GCIIQDMPNG  480
YSRVTWVEQA EVEENPVNQI FNQYVSSGMA FGAQRWLGIL QRQCERLASL MARNISDLGV  540
IPSPEARKSL MNLAQRMIKT FCMNISTSCG QSWTALSDSL EDTVRITTRK VTEPGQPNGL  600
ILCAVSTTWI PYNHFQVFDL LRDERRRAQL DVLSNGNSLH EVAHIANGSH PGNCISLLRI  660
NVASNSSQSV ELMLQESCTD DSGSLVVYTT VDVDAIQLAM NGEDPSCIPL LPLGFVVTPV  720
GQINNCGTNI NPSEANSGAQ SSEKRNLSIQ ESASGGCLLT VGLQALASTI PTAKLNLSSV  780
TAINHHLCNT VQQITAALSA FYPEPAITVP SPHLQPQQQQ LEPKQADEIS SNS
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0095931e-84AP009593.1 Solanum lycopersicum DNA, chromosome 8, clone: C08HBa0018O15, complete sequence.
GenBankHG9755201e-84HG975520.1 Solanum lycopersicum chromosome ch08, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016494823.10.0PREDICTED: homeobox-leucine zipper protein HDG5-like isoform X2
SwissprotQ9FJS20.0HDG5_ARATH; Homeobox-leucine zipper protein HDG5
TrEMBLA0A1S4C1690.0A0A1S4C169_TOBAC; homeobox-leucine zipper protein HDG5-like isoform X2
STRINGXP_009786380.10.0(Nicotiana sylvestris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G46880.10.0homeobox-7
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Lung SC, et al.
    Arabidopsis ACYL-COA-BINDING PROTEIN1 interacts with STEROL C4-METHYL OXIDASE1-2 to modulate gene expression of homeodomain-leucine zipper IV transcription factors.
    New Phytol., 2018. 218(1): p. 183-200
    [PMID:29288621]