PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016494648.1
Organism
Nicotiana tabacum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family GRAS
Protein Properties Length: 264aa    MW: 30430.3 Da    PI: 4.6738
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016494648.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS176.71.7e-541253132374
            GRAS 132 LasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvl.vakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserd 225
                     La+R++++p+l++T+v+ +++  k  ++e+++r++kfA+ +gvpfefnvl   ++l++l+ e+L++k++Ea+aVn++ +l ++      +e+ r 
  XP_016494648.1   1 LATRNDETPHLKLTVVVTESTLVKSVMKEVAQRMEKFARLMGVPFEFNVLgGLNNLKELTKESLNIKEEEAVAVNCIGALRKVE-----VEE-RG 89 
                     89****************9999***************************97788***************************997.....444.88 PP

            GRAS 226 evLklvkslsPkvvvvveqeadhnse..........sFlerflealeyysalfdsleaklpreseerikvErellgreivnvvace...gaerre 307
                     +v+++++sl+Pkvv++ve+ead +s           +F++ f e+l++y+  f++l++++p +s+er ++Ere  +++iv+v+ac    g+   e
  XP_016494648.1  90 DVIRILQSLNPKVVTIVEHEADFSSXheadfsrtrnDFVKCFEECLRFYTLYFEMLDESFPITSNERLVIERE-CSKSIVKVLACGdqiGEGDGE 183
                     9********************997777899999999*************************************.89*********7222344679 PP

            GRAS 308 rhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrve.....eesgslvlgWkdrpLvsvSaWr 374
                      +e+ ++W+erl+e  F+p pl+++a++++++ll+++k  g+++      +es  ++l+W+d+p+v++SaW+
  XP_016494648.1 184 TRERGNQWSERLREL-FSPFPLNDDAVDDVRSLLKRYK-AGWSLVlpqenQESPGIYLTWRDEPVVWASAWK 253
                     9999*********98.**********************.666665556556688899**************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098524.2941229IPR005202Transcription factor GRAS
PfamPF035145.8E-521253IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 264 aa     Download sequence    Send to blast
LATRNDETPH LKLTVVVTES TLVKSVMKEV AQRMEKFARL MGVPFEFNVL GGLNNLKELT  60
KESLNIKEEE AVAVNCIGAL RKVEVEERGD VIRILQSLNP KVVTIVEHEA DFSSXHEADF  120
SRTRNDFVKC FEECLRFYTL YFEMLDESFP ITSNERLVIE RECSKSIVKV LACGDQIGEG  180
DGETRERGNQ WSERLRELFS PFPLNDDAVD DVRSLLKRYK AGWSLVLPQE NQESPGIYLT  240
WRDEPVVWAS AWKPQEKSME RYDQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_B8e-691254220474Protein SHORT-ROOT
5b3h_B2e-691254166420Protein SHORT-ROOT
5b3h_E2e-691254166420Protein SHORT-ROOT
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0107851e-133AP010785.1 Solanum lycopersicum DNA, chromosome 8, clone: C08HBa0040B24, complete sequence.
GenBankHG9755201e-133HG975520.1 Solanum lycopersicum chromosome ch08, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016494648.10.0PREDICTED: protein SHORT-ROOT-like, partial
TrEMBLA0A1S4C0P50.0A0A1S4C0P5_TOBAC; protein SHORT-ROOT-like
STRINGXP_009785856.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA20312464
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37650.12e-70GRAS family protein