PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016494558.1
Organism
Nicotiana tabacum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family HD-ZIP
Protein Properties Length: 289aa    MW: 33343.9 Da    PI: 4.704
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016494558.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox62.85.2e-2054106456
                     -SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
        Homeobox   4 RttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                     +++++ +q+++Le+ Fe +++++ e++ ++A++lgL+ rqV +WFqNrRa++k
  XP_016494558.1  54 KRRLKVDQVQALEKIFEVDNKLDPERKVKIAQELGLQPRQVAIWFQNRRARWK 106
                     557899**********************************************9 PP
2HD-ZIP_I/II1247.1e-4053143292
     HD-ZIP_I/II   2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelk 92 
                     kkrrl+ +qv++LE+ Fe ++kL+perKv++a+eLglqprqva+WFqnrRAR+ktkqlE+dy+ Lk++y+al+ + +++e+e+e L +elk
  XP_016494558.1  53 KKRRLKVDQVQALEKIFEVDNKLDPERKVKIAQELGLQPRQVAIWFQNRRARWKTKQLERDYNILKANYEALQLNYTKVEQEKEGLINELK 143
                     9*************************************************************************************99987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466891.34E-1947110IPR009057Homeodomain-like
SMARTSM003891.1E-1951112IPR001356Homeobox domain
CDDcd000862.99E-1753109No hitNo description
PROSITE profilePS5007116.60153108IPR001356Homeobox domain
PfamPF000462.9E-1754106IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.607.6E-2059106IPR009057Homeodomain-like
PRINTSPR000311.7E-57988IPR000047Helix-turn-helix motif
PROSITE patternPS00027083106IPR017970Homeobox, conserved site
PRINTSPR000311.7E-588104IPR000047Helix-turn-helix motif
PfamPF021837.3E-15108148IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 289 aa     Download sequence    Send to blast
MKRFSFSDSS GKLLYPSEEK NTKNLAYSTD FQAMLDGLED EDGIEENGCV TGKKRRLKVD  60
QVQALEKIFE VDNKLDPERK VKIAQELGLQ PRQVAIWFQN RRARWKTKQL ERDYNILKAN  120
YEALQLNYTK VEQEKEGLIN ELKGLKEKIG EENSTAFQSP QEILELNPRN YEVNNKLYSD  180
FVDSKDGSSD SDSSGVMNEE NYNNTLNYQP LMPKVSSYNA LDHLSLSSST YTQLLDPRAS  240
STSSMRGYNQ QQQIGRMEEQ NGFTTEDSCN IYSVDQAPNL YWYLSDHRN
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
15257KKRRLK
2100108RRARWKTKQ
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankY173061e-133Y17306.1 Lycopersicon esculentum mRNA for homeodomain protein.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016494558.10.0PREDICTED: homeobox-leucine zipper protein ATHB-6-like
TrEMBLA0A1S4C0F40.0A0A1S4C0F4_TOBAC; homeobox-leucine zipper protein ATHB-6-like
STRINGPGSC0003DMT4000792301e-156(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA129391620
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G40060.12e-40homeobox protein 16