PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016493465.1
Organism
Nicotiana tabacum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family bZIP
Protein Properties Length: 159aa    MW: 18387.4 Da    PI: 6.9724
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016493465.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_148.42.1e-153189563
                    CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
          bZIP_1  5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63
                    ++ +r+q+NRe+ArrsR RK++ ++ L   v++L++eN    ++++  ++++a++++e+
  XP_016493465.1 31 RKRKRMQSNRESARRSRMRKQKHLDDLIGQVAQLKKENNNILSNINLTSQQYANVEAEN 89
                    5789*************************************************999987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.20.5.1702.4E-112681No hitNo description
SMARTSM003382.9E-182791IPR004827Basic-leucine zipper domain
PROSITE profilePS5021711.0472992IPR004827Basic-leucine zipper domain
PfamPF001707.1E-123189IPR004827Basic-leucine zipper domain
SuperFamilySSF579591.88E-123183No hitNo description
CDDcd147023.78E-163283No hitNo description
PROSITE patternPS0003603449IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 159 aa     Download sequence    Send to blast
MATSSGNSTG STQILNSGSE EDLQVSMLDE RKRKRMQSNR ESARRSRMRK QKHLDDLIGQ  60
VAQLKKENNN ILSNINLTSQ QYANVEAENS VLRAQMMELS QRLQSLNEIL SYINSNNNNN  120
NNGVFETHHH YQEDMMNNPW NLMYVNQPIM ASADMLYQY
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
13051RKRKRMQSNRESARRSRMRKQK
24350RRSRMRKQ
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that binds to the DNA G-box motif 5'-CACGTG-3' of MAN7 promoter. Involved in the positive regulation of seed germination through MAN7 gene activation. MAN7 is required for both, loosening of the micropylar endosperm, and rupture of the seed coat in germinating seeds. {ECO:0000269|PubMed:23461773}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754431e-65HG975443.1 Solanum pennellii chromosome ch04, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009618859.11e-112PREDICTED: bZIP transcription factor 11-like
RefseqXP_016493465.11e-112PREDICTED: bZIP transcription factor 53-like
SwissprotC0Z2L54e-50BZP44_ARATH; bZIP transcription factor 44
TrEMBLA0A1S4BX351e-111A0A1S4BX35_TOBAC; bZIP transcription factor 53-like
STRINGXP_009618859.11e-112(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA53724123
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75390.14e-46basic leucine-zipper 44
Publications ? help Back to Top
  1. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]
  2. Pedrotti L, et al.
    Snf1-RELATED KINASE1-Controlled C/S1-bZIP Signaling Activates Alternative Mitochondrial Metabolic Pathways to Ensure Plant Survival in Extended Darkness.
    Plant Cell, 2018. 30(2): p. 495-509
    [PMID:29348240]