PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016492111.1
Organism
Nicotiana tabacum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family MIKC_MADS
Protein Properties Length: 312aa    MW: 35462.4 Da    PI: 9.7307
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016492111.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF89.51.8e-2869119151
                     S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
          SRF-TF   1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 
                     krienk+ rqvtfskRr g+lKK +E+SvLCda+va+i+fs +gklyeys+
  XP_016492111.1  69 KRIENKISRQVTFSKRRSGLLKKTHEISVLCDADVALIVFSAKGKLYEYST 119
                     79***********************************************96 PP
2K-box95.49.1e-32136233299
           K-box   2 qkssgksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrk 96 
                     ++++ ++++++  e+++ e+ kL ++ie Lqr++Rh++GedL+s  l+e + LeqqL+++lk+iR++Kn+l++e+i++lqkkekelqe+n+ ++k
  XP_016492111.1 136 AERKLNANDSEPKENWTLEYPKLMSRIELLQRNIRHYMGEDLDSFGLREFHGLEQQLDTALKRIRTRKNQLMHESISQLQKKEKELQEQNHLMSK 230
                     5566677888889*******************************************************************************999 PP

           K-box  97 kle 99 
                     kl+
  XP_016492111.1 231 KLK 233
                     986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006631.65161121IPR002100Transcription factor, MADS-box
SMARTSM004322.9E-3861120IPR002100Transcription factor, MADS-box
SuperFamilySSF554557.59E-3362152IPR002100Transcription factor, MADS-box
CDDcd002651.83E-4162136No hitNo description
PROSITE patternPS00350063117IPR002100Transcription factor, MADS-box
PRINTSPR004042.2E-296383IPR002100Transcription factor, MADS-box
PfamPF003192.4E-2470117IPR002100Transcription factor, MADS-box
PRINTSPR004042.2E-298398IPR002100Transcription factor, MADS-box
PRINTSPR004042.2E-2998119IPR002100Transcription factor, MADS-box
PfamPF014865.2E-27145232IPR002487Transcription factor, K-box
PROSITE profilePS5129716.08148238IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 312 aa     Download sequence    Send to blast
MYSLLYIYHT NNNPVSSIIL LVGSGKVGNL YAELTLEAIA IGVTRTHNLG SKGLGEVTPL  60
MGRGRVEMKR IENKISRQVT FSKRRSGLLK KTHEISVLCD ADVALIVFSA KGKLYEYSTE  120
SSMESILERY ESYSYAERKL NANDSEPKEN WTLEYPKLMS RIELLQRNIR HYMGEDLDSF  180
GLREFHGLEQ QLDTALKRIR TRKNQLMHES ISQLQKKEKE LQEQNHLMSK KLKGNEKQQT  240
EDAQWGKPNP GQSSTPFILP QIPSQSPPHV PNLTIGGPFQ STGFTSTDEG QTRHGSNSLI  300
PPWMLHHLRN KG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6byy_A2e-1861134173MEF2 CHIMERA
6byy_B2e-1861134173MEF2 CHIMERA
6byy_C2e-1861134173MEF2 CHIMERA
6byy_D2e-1861134173MEF2 CHIMERA
6bz1_A2e-1861134173MEF2 CHIMERA
6bz1_B2e-1861134173MEF2 CHIMERA
6bz1_C2e-1861134173MEF2 CHIMERA
6bz1_D2e-1861134173MEF2 CHIMERA
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in flower development. {ECO:0000250|UniProtKB:Q0HA25}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016492111.10.0PREDICTED: agamous-like MADS-box protein AGL8 homolog isoform X1
SwissprotD7SMN65e-99FULL_VITVI; Agamous-like MADS-box protein FUL-L
TrEMBLA0A1S4BTA00.0A0A1S4BTA0_TOBAC; agamous-like MADS-box protein AGL8 homolog isoform X1
STRINGXP_009616788.10.0(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA4992397
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60910.15e-80AGAMOUS-like 8
Publications ? help Back to Top
  1. Jaillon O, et al.
    The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla.
    Nature, 2007. 449(7161): p. 463-7
    [PMID:17721507]
  2. Díaz-Riquelme J,Lijavetzky D,Martínez-Zapater JM,Carmona MJ
    Genome-wide analysis of MIKCC-type MADS box genes in grapevine.
    Plant Physiol., 2009. 149(1): p. 354-69
    [PMID:18997115]
  3. Grimplet J,Martínez-Zapater JM,Carmona MJ
    Structural and functional annotation of the MADS-box transcription factor family in grapevine.
    BMC Genomics, 2016. 17: p. 80
    [PMID:26818751]