PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_016491457.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | ZF-HD | ||||||||
Protein Properties | Length: 166aa MW: 18177 Da PI: 7.2602 | ||||||||
Description | ZF-HD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | ZF-HD_dimer | 101.3 | 6.6e-32 | 76 | 130 | 2 | 57 |
ZF-HD_dimer 2 ekvrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRrev 57 +++rY+eClkNhAas+Gg+++DGCgEfmp geegt +alkCaAC+CHRnFHR+e+ XP_016491457.1 76 SRARYRECLKNHAASIGGNVTDGCGEFMPC-GEEGTLEALKCAACNCHRNFHRKEQ 130 5789*************************9.999********************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF04770 | 3.4E-29 | 78 | 130 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
TIGRFAMs | TIGR01566 | 4.2E-30 | 79 | 129 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
ProDom | PD125774 | 3.0E-21 | 79 | 129 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
PROSITE profile | PS51523 | 26.399 | 80 | 129 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 166 aa Download sequence Send to blast |
MALAGEDKEM RMQGSLGYHS LDQNLDQGNH HHHHHHQPNN NNLQPQQDHE KSSSGAAPVV 60 PYSSGGSTNN KFKITSRARY RECLKNHAAS IGGNVTDGCG EFMPCGEEGT LEALKCAACN 120 CHRNFHRKEQ PNVGADNNNN AGIMVVHPLQ LSQPLPSPLP SMNHHH |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016491457.1 | 1e-121 | PREDICTED: zinc-finger homeodomain protein 3-like | ||||
TrEMBL | A0A1S4BRD9 | 1e-119 | A0A1S4BRD9_TOBAC; zinc-finger homeodomain protein 3-like | ||||
STRING | XP_009630982.1 | 2e-90 | (Nicotiana tomentosiformis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA518 | 24 | 128 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G75240.1 | 5e-30 | homeobox protein 33 |