PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_016491456.1

Organism

Nicotiana tabacum

Taxonomic ID

4097

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

ZF-HD

Protein Properties

Length: 149aa MW: 16557.1 Da PI: 7.1576

Description

ZF-HD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_016491456.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	ZF-HD_dimer	89.9	2.4e-28	76	130	2	57
ZF-HD_dimer 2 ekvrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRrev 57 +++rY+eClkNhAas+Gg+++DG gEfmp geegt +alkCa +CHRnFHR+e+ XP_016491456.1 76 SRARYRECLKNHAASIGGNVTDGYGEFMPY-GEEGTLEALKCASYNCHRNFHRKEQ 130 5789***********************9.999******************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF04770	1.0E-25	78	130	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
ProDom	PD125774	1.0E-19	79	129	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMs	TIGR01566	1.2E-26	79	129	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profile	PS51523	23.095	80	129	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain

Sequence ? help Back to Top
Protein Sequence Length: 149 aa Download sequence Send to blast
MALASEDKEM RMQGSLGYHS LDQNLDQGNY HHHHHHQPNN NNLQPQQDHE KSSSSAAPVV 60 PYSSGGSTNN KFKITSRARY RECLKNHAAS IGGNVTDGYG EFMPYGEEGT LEALKCASYN 120 CHRNFHRKEQ PNVGADNNNN AGIMVVHPL

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016491456.1	1e-109	PREDICTED: zinc-finger homeodomain protein 3-like
TrEMBL	A0A1S4BRG0	1e-108	A0A1S4BRG0_TOBAC; zinc-finger homeodomain protein 3-like
STRING	XP_009630983.1	1e-107	(Nicotiana tomentosiformis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA24400	2	2

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G75240.1	6e-27	homeobox protein 33