PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016491420.1
Organism
Nicotiana tabacum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family MIKC_MADS
Protein Properties Length: 209aa    MW: 24404.9 Da    PI: 10.0266
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016491420.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF78.16.2e-251059251
                    ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
          SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                    ri+n   rqvtfskR+ g++KKA+EL +LCdaev v ifsstg+lyeys+
  XP_016491420.1 10 RIDNPASRQVTFSKRKSGLIKKAKELAILCDAEVGVTIFSSTGRLYEYSN 59
                    8***********************************************95 PP
2K-box69.51.1e-23761621298
           K-box  12 akaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkl 98 
                     ++a+ +++e+++L+++++ Lq++ R+l+Ge+L+ + + +L+ Le+qLe  l++iR++K+++l+++ieel +k   +++en +L+kk+
  XP_016491420.1  76 SEAKLWRTEAKRLRQQMDDLQENYRRLKGEELSGMRIGDLHTLENQLEMRLNNIRTRKEKMLTDEIEELNQKRALIHHENIELSKKV 162
                     56788********************************************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006629.31161IPR002100Transcription factor, MADS-box
SMARTSM004322.8E-34160IPR002100Transcription factor, MADS-box
CDDcd002652.12E-31270No hitNo description
SuperFamilySSF554552.22E-26389IPR002100Transcription factor, MADS-box
PRINTSPR004044.9E-26323IPR002100Transcription factor, MADS-box
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PfamPF003191.2E-231057IPR002100Transcription factor, MADS-box
PRINTSPR004044.9E-262338IPR002100Transcription factor, MADS-box
PRINTSPR004044.9E-263859IPR002100Transcription factor, MADS-box
PfamPF014862.4E-2277162IPR002487Transcription factor, K-box
PROSITE profilePS5129712.91378168IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 209 aa     Download sequence    Send to blast
MARGKIAIRR IDNPASRQVT FSKRKSGLIK KAKELAILCD AEVGVTIFSS TGRLYEYSNS  60
RYNEEKEHHQ LLTPFSEAKL WRTEAKRLRQ QMDDLQENYR RLKGEELSGM RIGDLHTLEN  120
QLEMRLNNIR TRKEKMLTDE IEELNQKRAL IHHENIELSK KVTLVQHENR QLHKKGYGAI  180
DIRKEEGSFS GQAKSCVPEH EIRLGLQLQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5f28_A7e-17170177MEF2C
5f28_B7e-17170177MEF2C
5f28_C7e-17170177MEF2C
5f28_D7e-17170177MEF2C
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009608317.11e-153PREDICTED: MADS-box transcription factor 23-like isoform X2
RefseqXP_016491420.11e-153PREDICTED: MADS-box transcription factor 23-like isoform X2
SwissprotQ6EP494e-71MAD27_ORYSJ; MADS-box transcription factor 27
TrEMBLA0A1S4BRA71e-151A0A1S4BRA7_TOBAC; MADS-box transcription factor 23-like isoform X2
STRINGXP_009608298.11e-149(Nicotiana tomentosiformis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37940.11e-72AGAMOUS-like 21
Publications ? help Back to Top
  1. Puig J, et al.
    Analysis of the expression of the AGL17-like clade of MADS-box transcription factors in rice.
    Gene Expr. Patterns, 2013 Jun-Jul. 13(5-6): p. 160-70
    [PMID:23466806]
  2. Yu C, et al.
    The effects of fluctuations in the nutrient supply on the expression of five members of the AGL17 clade of MADS-box genes in rice.
    PLoS ONE, 2014. 9(8): p. e105597
    [PMID:25140876]