PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_016490965.1

Organism

Nicotiana tabacum

Taxonomic ID

4097

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

NAC

Protein Properties

Length: 296aa MW: 34297.7 Da PI: 6.6241

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_016490965.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	178.1	2.4e-55	16	142	1	129
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk 95 lppGfrFhPtdeel+++yL +kv ++++ + ++i evd++k+ePwdLp k+k +ekewyfF+ rd+ky+tg r+nrat++gyWkatgkdke+++ XP_016490965.1 16 LPPGFRFHPTDEELITHYLSPKVLDSSFCA-RAIGEVDLNKIEPWDLPWKAKMGEKEWYFFCVRDRKYPTGLRTNRATEAGYWKATGKDKEIFN- 108 79***********************998.89***********888999************************************. PP NAM 96 kgelvglkktLvfykgrapkgektdWvmheyrle 129 ++lvg+kktLvfy+grap+gek++Wvmheyrle XP_016490965.1 109 LKTLVGMKKTLVFYQGRAPRGEKSNWVMHEYRLE 142 8999**************************85 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	1.29E-63	13	166	IPR003441	NAC domain
PROSITE profile	PS51005	59.495	16	166	IPR003441	NAC domain
Pfam	PF02365	6.4E-30	17	141	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 296 aa Download sequence Send to blast
MENISGFCGN EEEMELPPGF RFHPTDEELI THYLSPKVLD SSFCARAIGE VDLNKIEPWD 60 LPWKAKMGEK EWYFFCVRDR KYPTGLRTNR ATEAGYWKAT GKDKEIFNLK TLVGMKKTLV 120 FYQGRAPRGE KSNWVMHEYR LEAKYSVHNL PQTAKNEWVI CRIFKKSAGG KKIHISGLMK 180 NNNINDNSLS SKLPPLMDIS SYDSQITTTA TCKGETSNYS HVTCFSNSIE DQKPQTSLVD 240 DLRTNNNPYV ENFQYGDFGL IQDHSILRLL FENKESEAKQ NYDMRAYEDL ECLWNY

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	3e-55	13	172	14	171	NO APICAL MERISTEM PROTEIN
1ut4_B	3e-55	13	172	14	171	NO APICAL MERISTEM PROTEIN
1ut7_A	3e-55	13	172	14	171	NO APICAL MERISTEM PROTEIN
1ut7_B	3e-55	13	172	14	171	NO APICAL MERISTEM PROTEIN
3swm_A	3e-55	13	172	17	174	NAC domain-containing protein 19
3swm_B	3e-55	13	172	17	174	NAC domain-containing protein 19
3swm_C	3e-55	13	172	17	174	NAC domain-containing protein 19
3swm_D	3e-55	13	172	17	174	NAC domain-containing protein 19
3swp_A	3e-55	13	172	17	174	NAC domain-containing protein 19
3swp_B	3e-55	13	172	17	174	NAC domain-containing protein 19
3swp_C	3e-55	13	172	17	174	NAC domain-containing protein 19
3swp_D	3e-55	13	172	17	174	NAC domain-containing protein 19
4dul_A	3e-55	13	172	14	171	NAC domain-containing protein 19
4dul_B	3e-55	13	172	14	171	NAC domain-containing protein 19
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Binds to the promoter regions of genes involved in chlorophyll catabolic processes, such as NYC1, SGR1, SGR2 and PAO. {ECO:0000269\|PubMed:27021284}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Repressed by the microRNA miR164. {ECO:0000269\|PubMed:15294871, ECO:0000269\|PubMed:17098808}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AF509877	0.0	AF509877.1 Petunia x hybrida nam-like protein 14 (NH14) mRNA, partial cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009592902.1	0.0	PREDICTED: NAC domain-containing protein 92-like
Refseq	XP_016490965.1	0.0	PREDICTED: NAC domain-containing protein 92-like
Swissprot	Q9FLJ2	1e-116	NC100_ARATH; NAC domain-containing protein 100
TrEMBL	A0A1S4BQ12	0.0	A0A1S4BQ12_TOBAC; NAC domain-containing protein 92-like
STRING	XP_009592902.1	0.0	(Nicotiana tomentosiformis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA152	24	279

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G61430.1	1e-118	NAC domain containing protein 100

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]