PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_016489897.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | MIKC_MADS | ||||||||
Protein Properties | Length: 233aa MW: 26392 Da PI: 6.9532 | ||||||||
Description | MIKC_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 89.6 | 1.7e-28 | 9 | 59 | 1 | 51 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 k+i+n + rqvtfskRr g++KKAeELSvLCda+va+iifsstgkl++yss XP_016489897.1 9 KKIDNATARQVTFSKRRRGLFKKAEELSVLCDADVALIIFSSTGKLFDYSS 59 68***********************************************96 PP | |||||||
2 | K-box | 47.8 | 6.1e-17 | 91 | 173 | 18 | 100 |
K-box 18 qqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkklee 100 + ++a+L kei++ +++R++ Ge+L+ Ls+++LqqLe+ Le +l+++ + K + ++++i++lq k +l een++L+++++e XP_016489897.1 91 NSDYARLTKEISQKSHQLRQMRGEELQGLSVEQLQQLERSLEAGLSRVIENKGDKIMKEINQLQVKGMQLMEENERLKQQVME 173 5689****************************************************************************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00432 | 2.1E-38 | 1 | 60 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 29.52 | 1 | 61 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 4.32E-31 | 3 | 85 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 9.0E-27 | 3 | 23 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00265 | 3.14E-39 | 5 | 77 | No hit | No description |
Pfam | PF00319 | 1.2E-25 | 10 | 57 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 9.0E-27 | 23 | 38 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 9.0E-27 | 38 | 59 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS51297 | 13.306 | 87 | 177 | IPR002487 | Transcription factor, K-box |
Pfam | PF01486 | 1.4E-15 | 92 | 171 | IPR002487 | Transcription factor, K-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 233 aa Download sequence Send to blast |
MVKDKIQIKK IDNATARQVT FSKRRRGLFK KAEELSVLCD ADVALIIFSS TGKLFDYSSS 60 SMKEILERHN LLSKNLQKLE QPSLELQLVE NSDYARLTKE ISQKSHQLRQ MRGEELQGLS 120 VEQLQQLERS LEAGLSRVIE NKGDKIMKEI NQLQVKGMQL MEENERLKQQ VMEISNNSSK 180 HPAIVVAVGS ENIYYEERQS SESVNNACNS TSPPPLEDHS SDTSLKLGLP YPG |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5f28_A | 2e-19 | 1 | 69 | 1 | 69 | MEF2C |
5f28_B | 2e-19 | 1 | 69 | 1 | 69 | MEF2C |
5f28_C | 2e-19 | 1 | 69 | 1 | 69 | MEF2C |
5f28_D | 2e-19 | 1 | 69 | 1 | 69 | MEF2C |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Putative transcription factor that coordinates gene expression underlying the differentiation of the pedicel abscission zone. May also be involved in the maintenance of the inflorescence meristem state. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009631749.1 | 1e-169 | PREDICTED: MADS-box protein JOINTLESS-like isoform X1 | ||||
Refseq | XP_016489897.1 | 1e-169 | PREDICTED: MADS-box protein JOINTLESS-like isoform X2 | ||||
Swissprot | Q9FUY6 | 1e-119 | JOIN_SOLLC; MADS-box protein JOINTLESS | ||||
TrEMBL | A0A1S4BM23 | 1e-168 | A0A1S4BM23_TOBAC; MADS-box protein JOINTLESS-like isoform X2 | ||||
STRING | XP_009631749.1 | 1e-169 | (Nicotiana tomentosiformis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA938 | 23 | 77 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G22540.1 | 1e-117 | MIKC_MADS family protein |
Publications ? help Back to Top | |||
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