PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_016489895.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | MIKC_MADS | ||||||||
Protein Properties | Length: 219aa MW: 24766.1 Da PI: 6.5315 | ||||||||
Description | MIKC_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 89.7 | 1.5e-28 | 9 | 59 | 1 | 51 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 k+i+n + rqvtfskRr g++KKAeELSvLCda+va+iifsstgkl++yss XP_016489895.1 9 KKIDNATARQVTFSKRRRGLFKKAEELSVLCDADVALIIFSSTGKLFDYSS 59 68***********************************************96 PP | |||||||
2 | K-box | 36.3 | 2.4e-13 | 91 | 164 | 18 | 91 |
K-box 18 qqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeen 91 + ++a+L kei++ +++R++ Ge+L+ Ls+++LqqLe+ Le +l+++ + K l+e+ e+l+++ e++++ XP_016489895.1 91 NSDYARLTKEISQKSHQLRQMRGEELQGLSVEQLQQLERSLEAGLSRVIENKGMQLMEENERLKQQVMEISNNS 164 5689**************************************************************99998875 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00432 | 2.1E-38 | 1 | 60 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 29.52 | 1 | 61 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 3.79E-31 | 3 | 85 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 7.8E-27 | 3 | 23 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00265 | 1.39E-39 | 5 | 77 | No hit | No description |
Pfam | PF00319 | 1.1E-25 | 10 | 57 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 7.8E-27 | 23 | 38 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 7.8E-27 | 38 | 59 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS51297 | 10.758 | 87 | 177 | IPR002487 | Transcription factor, K-box |
Pfam | PF01486 | 1.6E-10 | 92 | 163 | IPR002487 | Transcription factor, K-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 219 aa Download sequence Send to blast |
MVKDKIQIKK IDNATARQVT FSKRRRGLFK KAEELSVLCD ADVALIIFSS TGKLFDYSSS 60 SMKEILERHN LLSKNLQKLE QPSLELQLVE NSDYARLTKE ISQKSHQLRQ MRGEELQGLS 120 VEQLQQLERS LEAGLSRVIE NKGMQLMEEN ERLKQQVMEI SNNSSKHPAI VVAVGSENIY 180 YEERQSSESV NNACNSTSPP PLEDHSSDTS LKLGLPYPG |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5f28_A | 1e-19 | 1 | 69 | 1 | 69 | MEF2C |
5f28_B | 1e-19 | 1 | 69 | 1 | 69 | MEF2C |
5f28_C | 1e-19 | 1 | 69 | 1 | 69 | MEF2C |
5f28_D | 1e-19 | 1 | 69 | 1 | 69 | MEF2C |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Putative transcription factor that coordinates gene expression underlying the differentiation of the pedicel abscission zone. May also be involved in the maintenance of the inflorescence meristem state. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009631750.1 | 1e-159 | PREDICTED: MADS-box protein JOINTLESS-like isoform X2 | ||||
Refseq | XP_016489895.1 | 1e-159 | PREDICTED: MADS-box protein JOINTLESS-like isoform X1 | ||||
Swissprot | Q9FUY6 | 1e-107 | JOIN_SOLLC; MADS-box protein JOINTLESS | ||||
TrEMBL | A0A1S4BLZ8 | 1e-157 | A0A1S4BLZ8_TOBAC; MADS-box protein JOINTLESS-like isoform X1 | ||||
STRING | XP_009631749.1 | 1e-154 | (Nicotiana tomentosiformis) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G22540.1 | 1e-107 | MIKC_MADS family protein |
Publications ? help Back to Top | |||
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