PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016489487.1
Organism
Nicotiana tabacum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family bHLH
Protein Properties Length: 397aa    MW: 43625.6 Da    PI: 6.6499
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016489487.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH31.43.3e-10239287355
                     HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
             HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                      +h+ +Er RR+ri +++  L+el+P +    +k   Ka +L + ++Y++sLq
  XP_016489487.1 239 NSHSLAERVRRERISERMRLLQELVPGC----NKITGKAVMLDEIINYVQSLQ 287
                     58**************************....999*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000832.15E-11234291No hitNo description
SuperFamilySSF474595.37E-17234304IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.472236286IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.6E-16236304IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.9E-7239287IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003535.1E-10242292IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009637Biological Processresponse to blue light
GO:0005634Cellular Componentnucleus
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 397 aa     Download sequence    Send to blast
MGSKDNGDMR LQHRNGGDTS FNCPSSMPIV DPFSGSGWDP LLSLNQKESF KGSSVVGHNE  60
FANLPYQSSH FSHYPSDPNL VDMVPKFPAF GNESFSELVN TFPLQEQLRG ESCYPNYVKN  120
RGIPTEGAFS KGPHSQEECQ ISGEGAVEAS PNGKRKISGN HSLSNVGKNV EGELQKAPSR  180
DNSDCSKEQD GKRHKTDQNN SSNLRSKEAG KQVKEDSDGG EPPKDNYVHI RAKRGQATNS  240
HSLAERVRRE RISERMRLLQ ELVPGCNKIT GKAVMLDEII NYVQSLQQQV EFLSMKLATV  300
NPELNFDIDR ILSKEMLHQQ TSNAVLLGLG PGMSSSLPFP GISHGSFTGM PGTTPPFHPL  360
PQNVWDNELQ SLLQMGFETN SSMSNIVGPN GRSKLDL
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00135DAPTransfer from AT1G10120Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCU9157221e-104CU915722.3 S.lycopersicum DNA sequence from clone LE_HBa-128L9 on chromosome 4, complete sequence.
GenBankHG9754431e-104HG975443.1 Solanum pennellii chromosome ch04, complete genome.
GenBankHG9755161e-104HG975516.1 Solanum lycopersicum chromosome ch04, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016489487.10.0PREDICTED: transcription factor bHLH74-like isoform X2
TrEMBLA0A1S4BKY30.0A0A1S4BKY3_TOBAC; transcription factor bHLH74-like isoform X2
STRINGXP_009590631.10.0(Nicotiana tomentosiformis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G10120.13e-65bHLH family protein