PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_016489484.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | bHLH | ||||||||
Protein Properties | Length: 398aa MW: 43696.7 Da PI: 6.6499 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 31.4 | 3.3e-10 | 239 | 287 | 3 | 55 |
HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +h+ +Er RR+ri +++ L+el+P + +k Ka +L + ++Y++sLq XP_016489484.1 239 NSHSLAERVRRERISERMRLLQELVPGC----NKITGKAVMLDEIINYVQSLQ 287 58**************************....999*****************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00083 | 2.16E-11 | 234 | 291 | No hit | No description |
SuperFamily | SSF47459 | 5.37E-17 | 234 | 304 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 15.472 | 236 | 286 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 2.6E-16 | 236 | 304 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 2.9E-7 | 239 | 287 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 5.1E-10 | 242 | 292 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009637 | Biological Process | response to blue light | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 398 aa Download sequence Send to blast |
MGSKDNGDMR LQHRNGGDTS FNCPSSMPIV DPFSGSGWDP LLSLNQKESF KGSSVVGHNE 60 FANLPYQSSH FSHYPSDPNL VDMVPKFPAF GNESFSELVN TFPLQEQLRG ESCYPNYVKN 120 RGIPTEGAFS KGPHSQEECQ ISGEGAVEAS PNGKRKISGN HSLSNVGKNV EGELQKAPSR 180 DNSDCSKEQD GKRHKTDQNN SSNLRSKEAG KQVKEDSDGG EPPKDNYVHI RAKRGQATNS 240 HSLAERVRRE RISERMRLLQ ELVPGCNKIT GKAVMLDEII NYVQSLQQQV EFLSMKLATV 300 NPELNFDIDR ILSKEMLHQQ TSNAVLLGLG PGMSSSLPFP GISHGSFTGM PGTTPPFHPL 360 PQNVWDNELQ SLLQMGFETN SSMSNIVGPN AGRSKLDL |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00135 | DAP | Transfer from AT1G10120 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | CU915722 | 1e-104 | CU915722.3 S.lycopersicum DNA sequence from clone LE_HBa-128L9 on chromosome 4, complete sequence. | |||
GenBank | HG975443 | 1e-104 | HG975443.1 Solanum pennellii chromosome ch04, complete genome. | |||
GenBank | HG975516 | 1e-104 | HG975516.1 Solanum lycopersicum chromosome ch04, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016489484.1 | 0.0 | PREDICTED: transcription factor bHLH74-like isoform X1 | ||||
Refseq | XP_016489485.1 | 0.0 | PREDICTED: transcription factor bHLH74-like isoform X1 | ||||
Refseq | XP_016489486.1 | 0.0 | PREDICTED: transcription factor bHLH74-like isoform X1 | ||||
TrEMBL | A0A1S4BKT6 | 0.0 | A0A1S4BKT6_TOBAC; transcription factor bHLH74-like isoform X1 | ||||
STRING | XP_009590631.1 | 0.0 | (Nicotiana tomentosiformis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA5250 | 24 | 35 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G10120.1 | 2e-63 | bHLH family protein |