PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_016488234.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | TCP | ||||||||
Protein Properties | Length: 259aa MW: 27968.1 Da PI: 8.2695 | ||||||||
Description | TCP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCP | 125.7 | 4.9e-39 | 28 | 110 | 2 | 83 |
TCP 2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.eaesssssas 83 a+k+++++++hTkv+gR+RR+R++a+caar+F+L++eLG+++d++ti+WLlqqa+p+i+++tg+++++as+ ++ss s+++ XP_016488234.1 28 APKRSSNKDRHTKVEGRGRRIRMPALCAARIFQLTRELGHKSDGETIQWLLQQAEPSIIAATGNGTIPASALaVTGSSISQQG 110 789******************************************************************88853344433333 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03634 | 1.3E-30 | 33 | 133 | IPR005333 | Transcription factor, TCP |
PROSITE profile | PS51369 | 28.016 | 34 | 88 | IPR017887 | Transcription factor TCP subgroup |
Sequence ? help Back to Top |
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Protein Sequence Length: 259 aa Download sequence Send to blast |
MGENNPVEIK DFQIGNSEKD ETKKQQLAPK RSSNKDRHTK VEGRGRRIRM PALCAARIFQ 60 LTRELGHKSD GETIQWLLQQ AEPSIIAATG NGTIPASALA VTGSSISQQG ISVSAGLQQK 120 MGELSSSISS SSSFCRTNWP MVNGNFGRPH LATTGIWPPS TTNLATESSN YLQKITSFSG 180 FDLPATNLNP MSFTSILGAA NPQQLPGLEL GLSQDSHIGG LNLQSLSQIY QQMGHSRIHH 240 SQQQQQQQNS PEDDSQGSG |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor that binds to the site II motif (3'-TGGGCC/T-5') in the promoter of PCNA-2 and to 3'-GCCCG/A-5' elements in the promoters of cyclin CYCB1-1 and ribosomal protein genes. {ECO:0000269|PubMed:12631321, ECO:0000269|PubMed:16123132}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009757310.1 | 0.0 | PREDICTED: transcription factor TCP20 isoform X2 | ||||
Refseq | XP_016488234.1 | 0.0 | PREDICTED: transcription factor TCP20-like isoform X2 | ||||
Swissprot | Q9LSD5 | 5e-68 | TCP20_ARATH; Transcription factor TCP20 | ||||
TrEMBL | A0A1S4BH77 | 0.0 | A0A1S4BH77_TOBAC; transcription factor TCP20-like isoform X2 | ||||
TrEMBL | A0A1U7V6F6 | 0.0 | A0A1U7V6F6_NICSY; transcription factor TCP20 isoform X2 | ||||
STRING | XP_009757309.1 | 1e-169 | (Nicotiana sylvestris) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G27010.1 | 8e-63 | TCP family protein |