PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_016487977.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | C3H | ||||||||
Protein Properties | Length: 352aa MW: 39352.1 Da PI: 7.2242 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 22.3 | 2.3e-07 | 128 | 148 | 5 | 26 |
--SGGGGTS--TTTTT-SS-SS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHg 26 C++f++ G Ck Gd C +aHg XP_016487977.1 128 ACPDFRK-GLCKKGDACEYAHG 148 7******.*************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:4.10.1000.10 | 3.9E-5 | 120 | 150 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 1.0E-4 | 122 | 152 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 5.4E-5 | 123 | 149 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 13.366 | 123 | 150 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 1.9E-5 | 128 | 148 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 6.155 | 158 | 182 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 16 | 158 | 181 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 352 aa Download sequence Send to blast |
MMMIGRSPHS HPTVQVPPWD VIDDPTVDVH SPFSVTPNNY STSPDSGFDA LTALHRYLPS 60 NANDVMFDSD GLDIPVDAFS CDNFRMYEFK VRKCARGRSH DWTECPYAHP GEKARRRDPR 120 KYFYSGTACP DFRKGLCKKG DACEYAHGVF ECWLHPARYR TQPCKDGTHC RRRVCFFAHT 180 PEQLRVLPQN SPRSYAAESC DSFDGSPSRL GFDSFSSSPP FDSPPMTPSG SLSLNSVNGL 240 AESMRNMQIG MVRGLSSPTW GLQMGSPGFG SSRSPSMLRP GFMSLPTTPT RNPTRSGLAV 300 FDQWEKTYEE EPTMERVESG RDLRARIYAK LSMENSLDSG APDVGWVSEL LK |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009610482.1 | 0.0 | PREDICTED: zinc finger CCCH domain-containing protein 20-like | ||||
Refseq | XP_016487977.1 | 0.0 | PREDICTED: zinc finger CCCH domain-containing protein 20-like | ||||
Swissprot | Q9M0G2 | 1e-118 | C3H49_ARATH; Zinc finger CCCH domain-containing protein 49 | ||||
TrEMBL | A0A1S4BGJ1 | 0.0 | A0A1S4BGJ1_TOBAC; zinc finger CCCH domain-containing protein 20-like | ||||
STRING | XP_009610482.1 | 0.0 | (Nicotiana tomentosiformis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA1857 | 21 | 58 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G19810.1 | 1e-111 | C3H family protein |
Publications ? help Back to Top | |||
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