PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_016487877.1

Organism

Nicotiana tabacum

Taxonomic ID

4097

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

FAR1

Protein Properties

Length: 673aa MW: 78206.1 Da PI: 6.6565

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_016487877.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	74.6	2e-23	62	146	1	90
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 +fYn+Y+ke GF +r+s+s +++ +e +++++ Cs g+++++ + ++r+etrtgC a+l++k+ ++++w++ ++el+HnH+++ XP_016487877.1 62 DFYNRYGKEQGFGIRVSNSWFRSKRKERYRAKLSCSSAGFKKKSGAN-----HPRPETRTGCPAMLVIKLADSKRWRIVEVELQHNHPVS 146 6*******************999**************9988.....9********************************987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	3.2E-21	62	147	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	1.7E-23	267	359	IPR018289	MULE transposase domain
PROSITE profile	PS50966	9.31	553	589	IPR007527	Zinc finger, SWIM-type
SMART	SM00575	2.4E-6	564	591	IPR006564	Zinc finger, PMZ-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 673 aa Download sequence Send to blast
MFQMEAVCLN SDPVFDDCEE YEDEEDCSVE EHDDGVHEKD SKKESPQPTI GLEFGSFDEA 60 YDFYNRYGKE QGFGIRVSNS WFRSKRKERY RAKLSCSSAG FKKKSGANHP RPETRTGCPA 120 MLVIKLADSK RWRIVEVELQ HNHPVSPEVR RFYKSHKKMI LADKKQQESI PITEVHTIKL 180 YRTSIDAACN GLQKIKDKDS RFPVDTSKHL ELKEGDANAL YNYFCRMKLT NPNFFYLLDL 240 DDQGCLRNVF WADARSRAAF NYFSDAVAID TTSLRNKYVL PLISFVGVNN HGQPVLLGCG 300 FLGHESVEYF IWMFKSWHTS MLGRHPQVIV TDQSKPLQIA VSKVFPQARH CYCLSYIMQR 360 VPEKLGGLDG YESIKMQLYK AVYDSLKITE FESSWGQMIS QHGLKDNKWL QSLYEDREKW 420 VPVYLKDISF MGIIPITENE SLNAYFDGYV HKHTSFKEFV DKYDLAMQRK HMKEAMADME 480 SRSLSFELKT NCNFEVKLSK IFTKEIFKKF QAEVEGIYSC FNTRQVNING PIMTFVVKER 540 VESEGSEVEV KLFEVLYETT QAEIRCICSL FNFKGYLCRH ALNVLNYNGV EEIPSQYILP 600 RWDKDYKRKF PVDSGLCHID VNNPVELYNI LHKHVMQVVE EGVQSEEHYK AVLQEVEALL 660 SRFSLEDNNL VSL

Sequence ? help Back to Top

Protein Sequence Length: 673 aa Download sequence Send to blast

MFQMEAVCLN SDPVFDDCEE YEDEEDCSVE EHDDGVHEKD SKKESPQPTI GLEFGSFDEA  60
YDFYNRYGKE QGFGIRVSNS WFRSKRKERY RAKLSCSSAG FKKKSGANHP RPETRTGCPA  120
MLVIKLADSK RWRIVEVELQ HNHPVSPEVR RFYKSHKKMI LADKKQQESI PITEVHTIKL  180
YRTSIDAACN GLQKIKDKDS RFPVDTSKHL ELKEGDANAL YNYFCRMKLT NPNFFYLLDL  240
DDQGCLRNVF WADARSRAAF NYFSDAVAID TTSLRNKYVL PLISFVGVNN HGQPVLLGCG  300
FLGHESVEYF IWMFKSWHTS MLGRHPQVIV TDQSKPLQIA VSKVFPQARH CYCLSYIMQR  360
VPEKLGGLDG YESIKMQLYK AVYDSLKITE FESSWGQMIS QHGLKDNKWL QSLYEDREKW  420
VPVYLKDISF MGIIPITENE SLNAYFDGYV HKHTSFKEFV DKYDLAMQRK HMKEAMADME  480
SRSLSFELKT NCNFEVKLSK IFTKEIFKKF QAEVEGIYSC FNTRQVNING PIMTFVVKER  540
VESEGSEVEV KLFEVLYETT QAEIRCICSL FNFKGYLCRH ALNVLNYNGV EEIPSQYILP  600
RWDKDYKRKF PVDSGLCHID VNNPVELYNI LHKHVMQVVE EGVQSEEHYK AVLQEVEALL  660
SRFSLEDNNL VSL

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription activator involved in regulating light control of development. May have a role in controlling flowering time. {ECO:0000269\|PubMed:15591448}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269\|PubMed:15591448}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009801243.1	0.0	PREDICTED: protein FAR1-RELATED SEQUENCE 6-like isoform X2
Refseq	XP_016487877.1	0.0	PREDICTED: protein FAR1-RELATED SEQUENCE 6-like isoform X2
Swissprot	Q9SSQ4	0.0	FRS6_ARATH; Protein FAR1-RELATED SEQUENCE 6
TrEMBL	A0A1S4BG84	0.0	A0A1S4BG84_TOBAC; protein FAR1-RELATED SEQUENCE 6-like isoform X2
TrEMBL	A0A1U7YDP3	0.0	A0A1U7YDP3_NICSY; protein FAR1-RELATED SEQUENCE 6-like isoform X2
STRING	XP_009801241.1	0.0	(Nicotiana sylvestris)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G52520.1	0.0	FAR1-related sequence 6

Publications ? help Back to Top
Joly-Lopez Z, et al. Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements. Front Plant Sci, 2017. 8: p. 2027 [PMID:29250089]