PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_016487876.1

Organism

Nicotiana tabacum

Taxonomic ID

4097

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

FAR1

Protein Properties

Length: 677aa MW: 78673.7 Da PI: 6.8112

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_016487876.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	74.6	2e-23	66	150	1	90
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 +fYn+Y+ke GF +r+s+s +++ +e +++++ Cs g+++++ + ++r+etrtgC a+l++k+ ++++w++ ++el+HnH+++ XP_016487876.1 66 DFYNRYGKEQGFGIRVSNSWFRSKRKERYRAKLSCSSAGFKKKSGAN-----HPRPETRTGCPAMLVIKLADSKRWRIVEVELQHNHPVS 150 6*******************999**************9988.....9********************************987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	3.2E-21	66	151	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	1.7E-23	271	363	IPR018289	MULE transposase domain
PROSITE profile	PS50966	9.31	557	593	IPR007527	Zinc finger, SWIM-type
SMART	SM00575	2.4E-6	568	595	IPR006564	Zinc finger, PMZ-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 677 aa Download sequence Send to blast
MMKNLKQMEA VCLNSDPVFD DCEEYEDEED CSVEEHDDGV HEKDSKKESP QPTIGLEFGS 60 FDEAYDFYNR YGKEQGFGIR VSNSWFRSKR KERYRAKLSC SSAGFKKKSG ANHPRPETRT 120 GCPAMLVIKL ADSKRWRIVE VELQHNHPVS PEVRRFYKSH KKMILADKKQ QESIPITEVH 180 TIKLYRTSID AACNGLQKIK DKDSRFPVDT SKHLELKEGD ANALYNYFCR MKLTNPNFFY 240 LLDLDDQGCL RNVFWADARS RAAFNYFSDA VAIDTTSLRN KYVLPLISFV GVNNHGQPVL 300 LGCGFLGHES VEYFIWMFKS WHTSMLGRHP QVIVTDQSKP LQIAVSKVFP QARHCYCLSY 360 IMQRVPEKLG GLDGYESIKM QLYKAVYDSL KITEFESSWG QMISQHGLKD NKWLQSLYED 420 REKWVPVYLK DISFMGIIPI TENESLNAYF DGYVHKHTSF KEFVDKYDLA MQRKHMKEAM 480 ADMESRSLSF ELKTNCNFEV KLSKIFTKEI FKKFQAEVEG IYSCFNTRQV NINGPIMTFV 540 VKERVESEGS EVEVKLFEVL YETTQAEIRC ICSLFNFKGY LCRHALNVLN YNGVEEIPSQ 600 YILPRWDKDY KRKFPVDSGL CHIDVNNPVE LYNILHKHVM QVVEEGVQSE EHYKAVLQEV 660 EALLSRFSLE DNNLVSL

Sequence ? help Back to Top

Protein Sequence Length: 677 aa Download sequence Send to blast

MMKNLKQMEA VCLNSDPVFD DCEEYEDEED CSVEEHDDGV HEKDSKKESP QPTIGLEFGS  60
FDEAYDFYNR YGKEQGFGIR VSNSWFRSKR KERYRAKLSC SSAGFKKKSG ANHPRPETRT  120
GCPAMLVIKL ADSKRWRIVE VELQHNHPVS PEVRRFYKSH KKMILADKKQ QESIPITEVH  180
TIKLYRTSID AACNGLQKIK DKDSRFPVDT SKHLELKEGD ANALYNYFCR MKLTNPNFFY  240
LLDLDDQGCL RNVFWADARS RAAFNYFSDA VAIDTTSLRN KYVLPLISFV GVNNHGQPVL  300
LGCGFLGHES VEYFIWMFKS WHTSMLGRHP QVIVTDQSKP LQIAVSKVFP QARHCYCLSY  360
IMQRVPEKLG GLDGYESIKM QLYKAVYDSL KITEFESSWG QMISQHGLKD NKWLQSLYED  420
REKWVPVYLK DISFMGIIPI TENESLNAYF DGYVHKHTSF KEFVDKYDLA MQRKHMKEAM  480
ADMESRSLSF ELKTNCNFEV KLSKIFTKEI FKKFQAEVEG IYSCFNTRQV NINGPIMTFV  540
VKERVESEGS EVEVKLFEVL YETTQAEIRC ICSLFNFKGY LCRHALNVLN YNGVEEIPSQ  600
YILPRWDKDY KRKFPVDSGL CHIDVNNPVE LYNILHKHVM QVVEEGVQSE EHYKAVLQEV  660
EALLSRFSLE DNNLVSL

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription activator involved in regulating light control of development. May have a role in controlling flowering time. {ECO:0000269\|PubMed:15591448}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269\|PubMed:15591448}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009801241.1	0.0	PREDICTED: protein FAR1-RELATED SEQUENCE 6-like isoform X1
Refseq	XP_009801242.1	0.0	PREDICTED: protein FAR1-RELATED SEQUENCE 6-like isoform X1
Refseq	XP_016487876.1	0.0	PREDICTED: protein FAR1-RELATED SEQUENCE 6-like isoform X1
Swissprot	Q9SSQ4	0.0	FRS6_ARATH; Protein FAR1-RELATED SEQUENCE 6
TrEMBL	A0A1S4BG85	0.0	A0A1S4BG85_TOBAC; protein FAR1-RELATED SEQUENCE 6-like isoform X1
TrEMBL	A0A1U7YAU2	0.0	A0A1U7YAU2_NICSY; protein FAR1-RELATED SEQUENCE 6-like isoform X1
STRING	XP_009801241.1	0.0	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA1347	19	70

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G52520.1	0.0	FAR1-related sequence 6

Publications ? help Back to Top
Joly-Lopez Z, et al. Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements. Front Plant Sci, 2017. 8: p. 2027 [PMID:29250089]