PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_016487823.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | G2-like | ||||||||
Protein Properties | Length: 461aa MW: 50191.6 Da PI: 6.5843 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 87.6 | 1.2e-27 | 170 | 224 | 1 | 56 |
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRla 56 k +++WtpeLH+rFv+aveqL G +kA+P++ile+m++++Lt+++++SHLQkYR++ XP_016487823.1 170 KVKVDWTPELHRRFVQAVEQL-GVDKAVPSRILEIMGIDCLTRHNIASHLQKYRSH 224 5689*****************.********************************86 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 18.042 | 167 | 226 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.8E-26 | 168 | 227 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 5.38E-18 | 168 | 227 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 1.6E-26 | 170 | 224 | IPR006447 | Myb domain, plants |
Pfam | PF00249 | 1.5E-7 | 173 | 222 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 461 aa Download sequence Send to blast |
MLAVSSLSNT TTKDERANEM ESFTIGGGDD FPDFMGENLL DSIDFDDLFV GINDGDSLPD 60 LEMDAEIFAE FSVSSGDESD VNNYNTATTI KNVEQESCLR KEEVEKASSV SASDLGSGLT 120 SLNYQGDEFV STQKSEESTP PVNQNPVHKE SDKGKKSSAQ SKNNPQGKRK VKVDWTPELH 180 RRFVQAVEQL GVDKAVPSRI LEIMGIDCLT RHNIASHLQK YRSHRKHLLA REAEAASWSQ 240 RRQIYGCAVA GGGGGKRDIN PWPAPTIGFP PPPPPMATPM PHFRPLHVWG HPSVDQSYMH 300 MWPKHLAPSP SPHHHPSPVW PPAAAHPPHL HPSPPVDPSF WHPHHQRVPN SLTPGTTYFP 360 APIAPTRYPA PHPVPGIPPP AAMYKVDPII GVRTAVAGAG QPLPKPPCDF HPSKESIDAA 420 IGDVLSKPWL PLPLGLKPPA VDSVLGELQR QGVPKIPPTC A |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1irz_A | 1e-15 | 167 | 222 | 2 | 57 | ARR10-B |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator that functions with GLK2 to promote chloroplast development. Acts as an activator of nuclear photosynthetic genes involved in chlorophyll biosynthesis, light harvesting, and electron transport. Acts in a cell-autonomous manner to coordinate and maintain the photosynthetic apparatus within individual cells. May function in photosynthetic capacity optimization by integrating responses to variable environmental and endogenous cues (PubMed:11828027, PubMed:12220263, PubMed:17533111, PubMed:18643989, PubMed:19376934, PubMed:19383092, PubMed:19726569). Prevents premature senescence (PubMed:23459204). {ECO:0000269|PubMed:11828027, ECO:0000269|PubMed:12220263, ECO:0000269|PubMed:17533111, ECO:0000269|PubMed:18643989, ECO:0000269|PubMed:19376934, ECO:0000269|PubMed:19383092, ECO:0000269|PubMed:19726569, ECO:0000269|PubMed:23459204}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By light. Repressed by BZR2. {ECO:0000269|PubMed:12220263, ECO:0000269|PubMed:21214652}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009772660.1 | 0.0 | PREDICTED: transcription activator GLK1-like | ||||
Refseq | XP_016487823.1 | 0.0 | PREDICTED: transcription activator GLK1-like | ||||
Swissprot | Q9SIV3 | 2e-92 | GLK1_ARATH; Transcription activator GLK1 | ||||
TrEMBL | A0A1S4BG44 | 0.0 | A0A1S4BG44_TOBAC; transcription activator GLK1-like | ||||
TrEMBL | A0A1U7WEK1 | 0.0 | A0A1U7WEK1_NICSY; transcription activator GLK1-like | ||||
STRING | XP_009772660.1 | 0.0 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA2532 | 23 | 56 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G20570.1 | 7e-70 | GBF's pro-rich region-interacting factor 1 |