PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_016487338.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | ARF | ||||||||
Protein Properties | Length: 925aa MW: 101999 Da PI: 5.3393 | ||||||||
Description | ARF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 77.7 | 1.3e-24 | 146 | 247 | 1 | 99 |
EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrse 89 f+k+lt sd++++g +++p++ ae+ ++++++ ++l+++d++ ++W++++iyr++++r++lt+GW+ Fv a++L++gD+v+F +d ++ XP_016487338.1 146 FCKTLTASDTSTHGGFSVPRRAAEKLfppldfSMQPPT-QELVVRDLHDNTWTFRHIYRGQPKRHLLTTGWSMFVGAKRLRAGDSVLFIRD--DK 237 99*********************999*****9555544.49************************************************54..56 PP E..EEEEE-S CS B3 90 felvvkvfrk 99 +l+++v+r+ XP_016487338.1 238 SQLMLGVRRA 247 6679999997 PP | |||||||
2 | Auxin_resp | 118.4 | 5.9e-39 | 272 | 355 | 1 | 83 |
Auxin_resp 1 aahaastksvFevvYnPrastseFvvkvekvekalk.vkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 aahaa+++s+F+++YnPra++seFv++++k++k+++ +++svGmRf m+fete+s +rr++Gt+vg+sdldp+rWp+SkWr+L+ XP_016487338.1 272 AAHAAANRSTFTIFYNPRACPSEFVIPLAKYRKSVYgTQLSVGMRFGMMFETEESGKRRYMGTIVGISDLDPLRWPGSKWRCLQ 355 79**********************************9**********************************************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101936 | 2.35E-47 | 133 | 275 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 7.3E-42 | 139 | 260 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 5.09E-23 | 145 | 246 | No hit | No description |
SMART | SM01019 | 1.1E-24 | 146 | 248 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 1.6E-22 | 146 | 247 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 13.239 | 146 | 248 | IPR003340 | B3 DNA binding domain |
Pfam | PF06507 | 7.4E-34 | 272 | 355 | IPR010525 | Auxin response factor |
PROSITE profile | PS51745 | 25.51 | 812 | 896 | IPR000270 | PB1 domain |
SuperFamily | SSF54277 | 3.63E-9 | 825 | 891 | No hit | No description |
Pfam | PF02309 | 2.5E-7 | 854 | 897 | IPR033389 | AUX/IAA domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009725 | Biological Process | response to hormone | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0005515 | Molecular Function | protein binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 925 aa Download sequence Send to blast |
MGSVEEKHKP GSLVSGAHTL LEEMKLLKEM QDHSGGRKLI SSELWHACAG PLVTLPQVGS 60 LVYYFPQGHS EQVAVSTNRT ATSQIPNYPN LASQLLCQVH NVTLHADKET DEIYAQMSLQ 120 PVNSEKDVFP IPDFGLKPSK HPTEFFCKTL TASDTSTHGG FSVPRRAAEK LFPPLDFSMQ 180 PPTQELVVRD LHDNTWTFRH IYRGQPKRHL LTTGWSMFVG AKRLRAGDSV LFIRDDKSQL 240 MLGVRRANRQ QTSLPSSVLS ADSMHIGVLA AAAHAAANRS TFTIFYNPRA CPSEFVIPLA 300 KYRKSVYGTQ LSVGMRFGMM FETEESGKRR YMGTIVGISD LDPLRWPGSK WRCLQAEWDE 360 PGCGDKQSRV SPWEVETPES LFIFPSLTAG LKRPYQSSFL GAHTEWDSLM HRPFMRVPEN 420 VYGELQSSSI SNLWSEQLMK MLTRPPGVTG LQCGVPTVQD IKVALPQEAR NVIHAAGNQK 480 PELSTVEDTP VQSETNPQVI LSQPGVVNSI SSVQATLHAK SQPPEKVGSD TVGISSEPTK 540 ETSGSADKLD QFQSLGQCNE EKVTIKPASP HILPTDATAS HQNSLSQLQS SPWRQIETAS 600 ANNILQCSNN NEWSLPSFQS TAGLLRSPVS NSTLTKHEHS FMLPDSVIGP GLAPIGQDLW 660 DHQLNDVSFS QTNLQVPLLT QDITNMQFLP DSYGFKDLSE ESHNQSDIYS CLNFDSNSGS 720 TVIDTSVSST VLDEFCTLKH TDFQSPSDFL LGNFSSSQDQ SQITSASLAD SQNFSVQDFA 780 DNSGGASSSN VNFDESNLLQ NSSWQQVAPR VRTYTKIQKA GSVGRSIDVS SFKTYDELRS 840 EIERMFGLEG LLNDMRGSGW KLVYVDYEND VLLVGDDPWE EFVGCVRCIR ILSPTEVQQV 900 GEEGMQLLNS AGLQGINGST SEFPN |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4ldu_A | 0.0 | 1 | 380 | 5 | 392 | Auxin response factor 5 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). Seems to act as transcriptional activator. Formation of heterodimers with Aux/IAA proteins may alter their ability to modulate early auxin response genes expression. Mediates embryo axis formation and vascular tissues differentiation. Functionally redundant with ARF7. May be necessary to counteract AMP1 activity. {ECO:0000269|PubMed:12036261, ECO:0000269|PubMed:14973283, ECO:0000269|PubMed:17553903}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HM195248 | 0.0 | HM195248.1 Solanum lycopersicum auxin response factor 5 (ARF5) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009616123.1 | 0.0 | PREDICTED: auxin response factor 5 | ||||
Refseq | XP_016487336.1 | 0.0 | PREDICTED: auxin response factor 5-like | ||||
Refseq | XP_016487337.1 | 0.0 | PREDICTED: auxin response factor 5-like | ||||
Refseq | XP_016487338.1 | 0.0 | PREDICTED: auxin response factor 5-like | ||||
Refseq | XP_016487339.1 | 0.0 | PREDICTED: auxin response factor 5-like | ||||
Refseq | XP_018630477.1 | 0.0 | PREDICTED: auxin response factor 5 | ||||
Swissprot | P93024 | 0.0 | ARFE_ARATH; Auxin response factor 5 | ||||
TrEMBL | A0A1S4BES5 | 0.0 | A0A1S4BES5_TOBAC; Auxin response factor | ||||
STRING | XP_009616118.1 | 0.0 | (Nicotiana tomentosiformis) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G19850.1 | 0.0 | ARF family protein |