PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_016487163.1

Organism

Nicotiana tabacum

Taxonomic ID

4097

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

FAR1

Protein Properties

Length: 781aa MW: 89745.4 Da PI: 7.6983

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_016487163.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	67.2	4.2e-21	57	132	1	90
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 +fYn YA+++GF++r+ + ++s+ +g++++r+fvCskeg++++ +rtgC a ++v+k ++gkw+++++++eHnHe+ XP_016487163.1 57 EFYNLYATKLGFRIRIGQLYRSRVDGSVISRRFVCSKEGFQTT--------------SRTGCPAFIRVQKADSGKWVLANVKKEHNHEFE 132 6*************************************976..............589*************************986 PP
2	FAR1	66.3	8.3e-21	217	291	1	89
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHel 89 +fYn+YA + GF+vr+ + +sk++g+it+r+fvCskeg++++ +r+gC ++++++++g+w v+++++eHnHel XP_016487163.1 217 EFYNAYAANSGFKVRIGQLFRSKNDGSITSRRFVCSKEGHQHP--------------SRVGCGTFMRIQRQDTGRWLVDRFQNEHNHEL 291 6************************************9998..............4899*************************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	3.9E-17	57	131	IPR004330	FAR1 DNA binding domain
Pfam	PF03101	3.2E-16	217	291	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	7.5E-26	389	482	IPR018289	MULE transposase domain
Pfam	PF04434	5.4E-8	666	700	IPR007527	Zinc finger, SWIM-type
PROSITE profile	PS50966	10.46	667	703	IPR007527	Zinc finger, SWIM-type
SMART	SM00575	5.9E-8	678	705	IPR006564	Zinc finger, PMZ-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 781 aa Download sequence Send to blast
MSREELDNPM TVRAKPASLA IVNNNNGYHR DNEEEEGESK LEPNVGLEFD SAEEAQEFYN 60 LYATKLGFRI RIGQLYRSRV DGSVISRRFV CSKEGFQTTS RTGCPAFIRV QKADSGKWVL 120 ANVKKEHNHE FETSGEICPS RIQRKNIPNP KSSVVVVSTR TGLRSIDEDG PGPSGIIDLK 180 RFKRERIDVE RIDVELQPRG SEPYKGLEFT SADEAYEFYN AYAANSGFKV RIGQLFRSKN 240 DGSITSRRFV CSKEGHQHPS RVGCGTFMRI QRQDTGRWLV DRFQNEHNHE LGMPADASGR 300 VKGFKEEASS VLENMELVEL NGGLSLVTRG RESRIGSDWY NELFEYFQAR QAGDMGFFYA 360 VEMHNGRALS VFWADARSRF SCTQFGDAVV FETTYRKEGS YSVPLASFIG INHHRQPVLL 420 GCALIAEESE ESFTWVFQAW LRAMSGRHPV SMVADQDRAI QHSIAQVFPG IHHRFSAWQI 480 KATEQENIGA LLSMNPEFKY EYETCIFQSQ TANEFEAAWN VLVNKYNLRK NTWLMEMYRM 540 RKSWVPLHIR GTFFAGIPMD GSLKSYFGTI LTSQTPLSEF LIRYEKALEQ RREEERKEDF 600 NSFNLQAVLH TKDPIEDQCR RFYTITMFQV FQKELLECYS FVGIKINVEG AISRYLVQKS 660 GSGDERNTVA FNASNLKVSC SCKMFEFEGV LCRHALKVFQ IMNIRELPSR YILHRWTKDA 720 KYGILRDVDS GGASQDHKAL MLWSLREEAK NYIEAGTASL ERYKLAFEIM QEGRRNLCWQ 780 N

Sequence ? help Back to Top

Protein Sequence Length: 781 aa Download sequence Send to blast

MSREELDNPM TVRAKPASLA IVNNNNGYHR DNEEEEGESK LEPNVGLEFD SAEEAQEFYN  60
LYATKLGFRI RIGQLYRSRV DGSVISRRFV CSKEGFQTTS RTGCPAFIRV QKADSGKWVL  120
ANVKKEHNHE FETSGEICPS RIQRKNIPNP KSSVVVVSTR TGLRSIDEDG PGPSGIIDLK  180
RFKRERIDVE RIDVELQPRG SEPYKGLEFT SADEAYEFYN AYAANSGFKV RIGQLFRSKN  240
DGSITSRRFV CSKEGHQHPS RVGCGTFMRI QRQDTGRWLV DRFQNEHNHE LGMPADASGR  300
VKGFKEEASS VLENMELVEL NGGLSLVTRG RESRIGSDWY NELFEYFQAR QAGDMGFFYA  360
VEMHNGRALS VFWADARSRF SCTQFGDAVV FETTYRKEGS YSVPLASFIG INHHRQPVLL  420
GCALIAEESE ESFTWVFQAW LRAMSGRHPV SMVADQDRAI QHSIAQVFPG IHHRFSAWQI  480
KATEQENIGA LLSMNPEFKY EYETCIFQSQ TANEFEAAWN VLVNKYNLRK NTWLMEMYRM  540
RKSWVPLHIR GTFFAGIPMD GSLKSYFGTI LTSQTPLSEF LIRYEKALEQ RREEERKEDF  600
NSFNLQAVLH TKDPIEDQCR RFYTITMFQV FQKELLECYS FVGIKINVEG AISRYLVQKS  660
GSGDERNTVA FNASNLKVSC SCKMFEFEGV LCRHALKVFQ IMNIRELPSR YILHRWTKDA  720
KYGILRDVDS GGASQDHKAL MLWSLREEAK NYIEAGTASL ERYKLAFEIM QEGRRNLCWQ  780
N

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription activator involved in regulating light control of development.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269\|PubMed:15591448}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HG975449	0.0	HG975449.1 Solanum pennellii chromosome ch10, complete genome.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009791235.1	0.0	PREDICTED: protein FAR1-RELATED SEQUENCE 7-like
Refseq	XP_009791236.1	0.0	PREDICTED: protein FAR1-RELATED SEQUENCE 7-like
Refseq	XP_009791237.1	0.0	PREDICTED: protein FAR1-RELATED SEQUENCE 7-like
Refseq	XP_016487162.1	0.0	PREDICTED: protein FAR1-RELATED SEQUENCE 7-like
Refseq	XP_016487163.1	0.0	PREDICTED: protein FAR1-RELATED SEQUENCE 7-like
Swissprot	Q9M8J3	0.0	FRS7_ARATH; Protein FAR1-RELATED SEQUENCE 7
TrEMBL	A0A1S4BE80	0.0	A0A1S4BE80_TOBAC; protein FAR1-RELATED SEQUENCE 7-like
TrEMBL	A0A1U7XGN8	0.0	A0A1U7XGN8_NICSY; protein FAR1-RELATED SEQUENCE 7-like
STRING	XP_009791235.1	0.0	(Nicotiana sylvestris)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G06250.1	0.0	FAR1-related sequence 7

Publications ? help Back to Top
Ritter A, et al. The transcriptional repressor complex FRS7-FRS12 regulates flowering time and growth in Arabidopsis. Nat Commun, 2017. 8: p. 15235 [PMID:28492275] Joly-Lopez Z, et al. Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements. Front Plant Sci, 2017. 8: p. 2027 [PMID:29250089]