PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_016486665.1

Organism

Nicotiana tabacum

Taxonomic ID

4097

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

HD-ZIP

Protein Properties

Length: 264aa MW: 29477.1 Da PI: 8.5777

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_016486665.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	58.2	1.4e-18	120	174	2	56
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 rk+ ++tk q Lee F+++++++ +++++LA+ l+L rqV vWFqNrRa+ k XP_016486665.1 120 RKKLRLTKAQSALLEESFKQHSTLNPKQKQDLARDLNLRPRQVEVWFQNRRARTK 174 788899***********************************************98 PP
2	HD-ZIP_I/II	124.4	5.3e-40	120	208	1	90
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLree 90 +kk+rl+k q++lLEesF+++++L+p++K++lar+L+l+prqv+vWFqnrRARtk+kq+E+d+e+Lk+++++l+een+rL+ke +eL+ + XP_016486665.1 120 RKKLRLTKAQSALLEESFKQHSTLNPKQKQDLARDLNLRPRQVEVWFQNRRARTKLKQTEVDCEFLKKCCETLTEENRRLHKELQELK-A 208 69*************************************************************************************9.4 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	3.05E-18	108	177	IPR009057	Homeodomain-like
PROSITE profile	PS50071	17.443	116	176	IPR001356	Homeobox domain
SMART	SM00389	3.2E-15	118	180	IPR001356	Homeobox domain
Gene3D	G3DSA:1.10.10.60	1.4E-17	120	174	IPR009057	Homeodomain-like
Pfam	PF00046	4.2E-16	120	174	IPR001356	Homeobox domain
CDD	cd00086	3.74E-15	120	177	No hit	No description
PROSITE pattern	PS00027	0	151	174	IPR017970	Homeobox, conserved site
SMART	SM00340	5.0E-24	176	219	IPR003106	Leucine zipper, homeobox-associated
Pfam	PF02183	7.1E-11	176	209	IPR003106	Leucine zipper, homeobox-associated

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 264 aa Download sequence Send to blast
MGSFDDISNT GLVLGLGFST TVDQKSTKIL LAGKGPSLGF EPSLTLSLSG DRTYNEQQQA 60 AKKVKNDHQS ADLYRQDSAA SSYSNASVKR ERDAGSEETT EVERVSSRVS DEDDDGSNAR 120 KKLRLTKAQS ALLEESFKQH STLNPKQKQD LARDLNLRPR QVEVWFQNRR ARTKLKQTEV 180 DCEFLKKCCE TLTEENRRLH KELQELKAVK IAQPLYMQLP AATLTMCPSC ERIGGVGENP 240 SKNPFTLAQK PHFYNSFTNP SAAC

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	168	176	RRARTKLKQ

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. {ECO:0000250}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	EU998971	0.0	EU998971.1 Nicotiana benthamiana homeodomain leucine-zipper 1 (HB1) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016486665.1	0.0	PREDICTED: homeobox-leucine zipper protein HAT22-like
Swissprot	P46604	6e-93	HAT22_ARATH; Homeobox-leucine zipper protein HAT22
TrEMBL	A0A1S4BCK6	0.0	A0A1S4BCK6_TOBAC; homeobox-leucine zipper protein HAT22-like
STRING	XP_009775231.1	0.0	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA290	24	186

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G37790.1	3e-87	HD-ZIP family protein

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Liu T,Longhurst AD,Talavera-Rauh F,Hokin SA,Barton MK The Arabidopsis transcription factor ABIG1 relays ABA signaled growth inhibition and drought induced senescence. Elife, 2017. [PMID:27697148] Song L, et al. A transcription factor hierarchy defines an environmental stress response network. Science, 2017. [PMID:27811239]