PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_016486020.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | G2-like | ||||||||
Protein Properties | Length: 259aa MW: 29045.5 Da PI: 7.2576 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 93.1 | 2.3e-29 | 26 | 86 | 1 | 55 |
G2-like 1 kprlrWtpeLHerFveaveqLGGsek......AtPktilelmkvkgLtlehvkSHLQkYRl 55 kprlrWt +LH++Fv+av++LGG+ek AtPk++l+lm+vkgLtl+h+kSHLQkYRl XP_016486020.1 26 KPRLRWTVDLHQHFVDAVTKLGGPEKgfgfteATPKSVLRLMGVKGLTLYHLKSHLQKYRL 86 79*********************9866666669***************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 8.2E-30 | 23 | 87 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 2.7E-20 | 26 | 87 | IPR006447 | Myb domain, plants |
SuperFamily | SSF46689 | 5.73E-14 | 26 | 89 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 1.8E-7 | 28 | 85 | IPR001005 | SANT/Myb domain |
Pfam | PF14379 | 1.6E-12 | 133 | 165 | IPR025756 | MYB-CC type transcription factor, LHEQLE-containing domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 259 aa Download sequence Send to blast |
MYNGSGAGRG GSFMYENEVV MTRDPKPRLR WTVDLHQHFV DAVTKLGGPE KGFGFTEATP 60 KSVLRLMGVK GLTLYHLKSH LQKYRLGQQA KKQNAAEQNK ENSSGDSSGQ FNLHSSGPGT 120 SSLSMNYIQG DVPIAEAVMS QIEVQKRLQD QLEVQQKLQM RIEAQVEATR AQLTDLDLPL 180 SNLMNYTNRQ NRNDNIIGKT THDDNIKEEL QRSNYIVEEE QKSNMNLNFD LNSRNSYDFV 240 GANAAVLEAK ALSHGRLET |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6j4r_A | 3e-17 | 26 | 85 | 1 | 54 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_B | 3e-17 | 26 | 85 | 1 | 54 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_C | 3e-17 | 26 | 85 | 1 | 54 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_D | 3e-17 | 26 | 85 | 1 | 54 | Protein PHOSPHATE STARVATION RESPONSE 1 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG975445 | 8e-34 | HG975445.1 Solanum pennellii chromosome ch06, complete genome. | |||
GenBank | HG975518 | 8e-34 | HG975518.1 Solanum lycopersicum chromosome ch06, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016486020.1 | 0.0 | PREDICTED: myb family transcription factor APL-like isoform X3 | ||||
Swissprot | C0SVS4 | 8e-59 | PHLB_ARATH; Myb family transcription factor PHL11 | ||||
TrEMBL | A0A1S4BAR4 | 0.0 | A0A1S4BAR4_TOBAC; myb family transcription factor APL-like isoform X3 | ||||
STRING | XP_009769428.1 | 0.0 | (Nicotiana sylvestris) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G45580.1 | 9e-53 | G2-like family protein |
Publications ? help Back to Top | |||
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