PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_016486018.1

Organism

Nicotiana tabacum

Taxonomic ID

4097

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

G2-like

Protein Properties

Length: 283aa MW: 31601.5 Da PI: 9.1203

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_016486018.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	92.8	2.7e-29	26	86	1	55
G2-like 1 kprlrWtpeLHerFveaveqLGGsek......AtPktilelmkvkgLtlehvkSHLQkYRl 55 kprlrWt +LH++Fv+av++LGG+ek AtPk++l+lm+vkgLtl+h+kSHLQkYRl XP_016486018.1 26 KPRLRWTVDLHQHFVDAVTKLGGPEKgfgfteATPKSVLRLMGVKGLTLYHLKSHLQKYRL 86 79*******************9866666669*************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	9.7E-30	23	87	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	3.1E-20	26	87	IPR006447	Myb domain, plants
SuperFamily	SSF46689	6.81E-14	26	89	IPR009057	Homeodomain-like
Pfam	PF00249	2.1E-7	28	85	IPR001005	SANT/Myb domain
Pfam	PF14379	2.0E-20	133	179	IPR025756	MYB-CC type transcription factor, LHEQLE-containing domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 283 aa Download sequence Send to blast
MYNGSGAGRG GSFMYENEVV MTRDPKPRLR WTVDLHQHFV DAVTKLGGPE KGFGFTEATP 60 KSVLRLMGVK GLTLYHLKSH LQKYRLGQQA KKQNAAEQNK ENSSGDSSGQ FNLHSSGPGT 120 SSLSMNYIQG DVPIAEAVMS QIEVQKRLQD QLEVQQKLQM RIEAQGKYLQ VILSKAQKSI 180 PVNMNSPSAV EATRAQLTDL DLPLSNLMNY TNRQNRNDNI IGKTTHDDNI KEELQRSNYI 240 VEEEQKSNMN LNFDLNSRNS YDFVGANAAV LEAKALSHGR LET

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4r_A	5e-17	26	85	1	54	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B	5e-17	26	85	1	54	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C	5e-17	26	85	1	54	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D	5e-17	26	85	1	54	Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HG975445	9e-34	HG975445.1 Solanum pennellii chromosome ch06, complete genome.
GenBank	HG975518	9e-34	HG975518.1 Solanum lycopersicum chromosome ch06, complete genome.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016486018.1	0.0	PREDICTED: myb family transcription factor APL-like isoform X1
Swissprot	C0SVS4	7e-71	PHLB_ARATH; Myb family transcription factor PHL11
TrEMBL	A0A1S4BB26	0.0	A0A1S4BB26_TOBAC; myb family transcription factor APL-like isoform X1
STRING	XP_009769428.1	0.0	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA4416	21	39

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G45580.1	7e-65	G2-like family protein

Publications ? help Back to Top
Petridis A,Döll S,Nichelmann L,Bilger W,Mock HP Arabidopsis thaliana G2-LIKE FLAVONOID REGULATOR and BRASSINOSTEROID ENHANCED EXPRESSION1 are low-temperature regulators of flavonoid accumulation. New Phytol., 2016. 211(3): p. 912-25 [PMID:27125220]