PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016485773.1
Organism
Nicotiana tabacum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family MIKC_MADS
Protein Properties Length: 184aa    MW: 21198.2 Da    PI: 9.7889
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016485773.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF87.48e-28959151
                    S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
          SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                    krien++ rqvtfskRr+g+lKKA+ELS+LCdaeva++ifs++gk y ++s
  XP_016485773.1  9 KRIENQTSRQVTFSKRRTGLLKKAFELSILCDAEVALLIFSPSGKAYQFAS 59
                    79**********************************************986 PP
2K-box54.93.8e-19871601487
           K-box  14 aeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekel 87 
                     +e  + e++ + + i++L+   +h+ Ged+++L +keL+qLe+qL  ++++iRskK+++l+e+  +lqk+ + +
  XP_016485773.1  87 TEVRRFEIEDMTRTIDELEARDKHFAGEDISTLGMKELKQLERQLRIGVERIRSKKHKILHEENIHLQKQVRLH 160
                     555667999**********99***********************************************987654 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006632.057161IPR002100Transcription factor, MADS-box
SMARTSM004325.9E-40160IPR002100Transcription factor, MADS-box
SuperFamilySSF554553.14E-31280IPR002100Transcription factor, MADS-box
CDDcd002651.13E-38278No hitNo description
PRINTSPR004045.6E-30323IPR002100Transcription factor, MADS-box
PfamPF003192.6E-261057IPR002100Transcription factor, MADS-box
PRINTSPR004045.6E-302338IPR002100Transcription factor, MADS-box
PRINTSPR004045.6E-303859IPR002100Transcription factor, MADS-box
PROSITE profilePS5129710.07387184IPR002487Transcription factor, K-box
PfamPF014862.4E-1591158IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 184 aa     Download sequence    Send to blast
MGRGKVELKR IENQTSRQVT FSKRRTGLLK KAFELSILCD AEVALLIFSP SGKAYQFASH  60
DIDRTILRYK NEVGLSKSTN DQGFRATEVR RFEIEDMTRT IDELEARDKH FAGEDISTLG  120
MKELKQLERQ LRIGVERIRS KKHKILHEEN IHLQKQVRLH ELREGEGSST ILDSDASFEL  180
ISKG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1tqe_P4e-24169169Myocyte-specific enhancer factor 2B
1tqe_Q4e-24169169Myocyte-specific enhancer factor 2B
1tqe_R4e-24169169Myocyte-specific enhancer factor 2B
1tqe_S4e-24169169Myocyte-specific enhancer factor 2B
5f28_A4e-24181183MEF2C
5f28_B4e-24181183MEF2C
5f28_C4e-24181183MEF2C
5f28_D4e-24181183MEF2C
6c9l_A4e-24169169Myocyte-specific enhancer factor 2B
6c9l_B4e-24169169Myocyte-specific enhancer factor 2B
6c9l_C4e-24169169Myocyte-specific enhancer factor 2B
6c9l_D4e-24169169Myocyte-specific enhancer factor 2B
6c9l_E4e-24169169Myocyte-specific enhancer factor 2B
6c9l_F4e-24169169Myocyte-specific enhancer factor 2B
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in seed development. {ECO:0000269|PubMed:29853599}.
UniProtProbable transcription factor involved in seed development (PubMed:21447172, Ref.1, PubMed:29853599). Plays a role in seed morphogenesis by promoting the correct development of endotesta cell layer, which directs the further development of the seed coat, the endosperm, and consequently the embryo (Ref.1, PubMed:29853599). {ECO:0000269|PubMed:21447172, ECO:0000269|PubMed:29853599, ECO:0000269|Ref.1}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016485773.11e-130PREDICTED: agamous-like MADS-box protein AGL19 isoform X2
SwissprotA0A217EJJ04e-44AG11S_VITVI; Agamous-like MADS-box protein AGL11
SwissprotF6I4574e-44AG11C_VITVI; Agamous-like MADS-box protein AGL11
TrEMBLA0A1S4BAD81e-129A0A1S4BAD8_TOBAC; agamous-like MADS-box protein AGL19 isoform X2
STRINGSolyc03g019710.2.11e-100(Solanum lycopersicum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G22950.14e-46AGAMOUS-like 19
Publications ? help Back to Top
  1. Jaillon O, et al.
    The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla.
    Nature, 2007. 449(7161): p. 463-7
    [PMID:17721507]
  2. Díaz-Riquelme J,Lijavetzky D,Martínez-Zapater JM,Carmona MJ
    Genome-wide analysis of MIKCC-type MADS box genes in grapevine.
    Plant Physiol., 2009. 149(1): p. 354-69
    [PMID:18997115]
  3. Mejía N, et al.
    Molecular, genetic and transcriptional evidence for a role of VvAGL11 in stenospermocarpic seedlessness in grapevine.
    BMC Plant Biol., 2011. 11: p. 57
    [PMID:21447172]
  4. Grimplet J,Martínez-Zapater JM,Carmona MJ
    Structural and functional annotation of the MADS-box transcription factor family in grapevine.
    BMC Genomics, 2016. 17: p. 80
    [PMID:26818751]
  5. Malabarba J, et al.
    The MADS-box gene Agamous-like 11 is essential for seed morphogenesis in grapevine.
    J. Exp. Bot., 2017. 68(7): p. 1493-1506
    [PMID:28369525]
  6. Royo C, et al.
    The Major Origin of Seedless Grapes Is Associated with a Missense Mutation in the MADS-Box Gene VviAGL11.
    Plant Physiol., 2018. 177(3): p. 1234-1253
    [PMID:29853599]