PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_016485764.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | MIKC_MADS | ||||||||
Protein Properties | Length: 198aa MW: 23004.3 Da PI: 10.1241 | ||||||||
Description | MIKC_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 87.2 | 9.1e-28 | 9 | 59 | 1 | 51 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 krien++ rqvtfskRr+g+lKKA+ELS+LCdaeva++ifs++gk y ++s XP_016485764.1 9 KRIENQTSRQVTFSKRRTGLLKKAFELSILCDAEVALLIFSPSGKAYQFAS 59 79**********************************************986 PP | |||||||
2 | K-box | 63.7 | 6.7e-22 | 87 | 171 | 14 | 98 |
K-box 14 aeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkl 98 +e + e++ + + i++L+ +h+ Ged+++L +keL+qLe+qL ++++iRskK ++ e+i+ l+++ k l+een L+k++ XP_016485764.1 87 TEVRRFEIEDMTRTIDELEARDKHFAGEDISTLGMKELKQLERQLRIGVERIRSKKRCIISEHINWLKRRHKILHEENIHLQKQV 171 555667999**********99*************************************************************997 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50066 | 32.057 | 1 | 61 | IPR002100 | Transcription factor, MADS-box |
SMART | SM00432 | 5.9E-40 | 1 | 60 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 3.66E-31 | 2 | 80 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00265 | 2.95E-38 | 2 | 78 | No hit | No description |
PRINTS | PR00404 | 6.6E-30 | 3 | 23 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 3.0E-26 | 10 | 57 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 6.6E-30 | 23 | 38 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 6.6E-30 | 38 | 59 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS51297 | 12.162 | 87 | 179 | IPR002487 | Transcription factor, K-box |
Pfam | PF01486 | 3.8E-21 | 91 | 171 | IPR002487 | Transcription factor, K-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 198 aa Download sequence Send to blast |
MGRGKVELKR IENQTSRQVT FSKRRTGLLK KAFELSILCD AEVALLIFSP SGKAYQFASH 60 DIDRTILRYK NEVGLSKSTN DQGFRATEVR RFEIEDMTRT IDELEARDKH FAGEDISTLG 120 MKELKQLERQ LRIGVERIRS KKRCIISEHI NWLKRRHKIL HEENIHLQKQ VRLHELREGE 180 GSSTILDSDA SFELISKG |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1tqe_P | 9e-24 | 1 | 69 | 1 | 69 | Myocyte-specific enhancer factor 2B |
1tqe_Q | 9e-24 | 1 | 69 | 1 | 69 | Myocyte-specific enhancer factor 2B |
1tqe_R | 9e-24 | 1 | 69 | 1 | 69 | Myocyte-specific enhancer factor 2B |
1tqe_S | 9e-24 | 1 | 69 | 1 | 69 | Myocyte-specific enhancer factor 2B |
5f28_A | 8e-24 | 1 | 81 | 1 | 83 | MEF2C |
5f28_B | 8e-24 | 1 | 81 | 1 | 83 | MEF2C |
5f28_C | 8e-24 | 1 | 81 | 1 | 83 | MEF2C |
5f28_D | 8e-24 | 1 | 81 | 1 | 83 | MEF2C |
6c9l_A | 9e-24 | 1 | 69 | 1 | 69 | Myocyte-specific enhancer factor 2B |
6c9l_B | 9e-24 | 1 | 69 | 1 | 69 | Myocyte-specific enhancer factor 2B |
6c9l_C | 9e-24 | 1 | 69 | 1 | 69 | Myocyte-specific enhancer factor 2B |
6c9l_D | 9e-24 | 1 | 69 | 1 | 69 | Myocyte-specific enhancer factor 2B |
6c9l_E | 9e-24 | 1 | 69 | 1 | 69 | Myocyte-specific enhancer factor 2B |
6c9l_F | 9e-24 | 1 | 69 | 1 | 69 | Myocyte-specific enhancer factor 2B |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KF270624 | 1e-160 | KF270624.1 Solanum lycopersicum cultivar Florida Petite TM8-like protein mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016485764.1 | 1e-141 | PREDICTED: truncated transcription factor CAULIFLOWER D-like isoform X1 | ||||
TrEMBL | A0A1S4BA71 | 1e-140 | A0A1S4BA71_TOBAC; truncated transcription factor CAULIFLOWER D-like isoform X1 | ||||
STRING | PGSC0003DMT400039313 | 1e-108 | (Solanum tuberosum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA40 | 24 | 625 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G45660.1 | 4e-48 | AGAMOUS-like 20 |