PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | XP_016484940.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
|
||||||||
Family | TCP | ||||||||
Protein Properties | Length: 290aa MW: 31278.8 Da PI: 9.1334 | ||||||||
Description | TCP family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCP | 119.5 | 4e-37 | 48 | 147 | 7 | 89 |
TCP 7 rhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssaseceaesssssasnsssg............. 88 + +++hTkv+gR+RR+R++a+caar+F+L++eLG+++d++ti+WLlqqa+p+i ++tgt++++as+ a++ s+s+++++ XP_016484940.1 48 KRKDRHTKVEGRGRRIRMPALCAARIFQLTRELGHKSDGETIQWLLQQAEPSIFAATGTGTIPASALAAAATGPSVSQQGISvsaglhqkmdelg 142 579*************************************************************8886666666666666664444433333333 PP TCP 89 ....k 89 XP_016484940.1 143 antvG 147 33331 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03634 | 1.4E-28 | 48 | 154 | IPR005333 | Transcription factor, TCP |
PROSITE profile | PS51369 | 27.675 | 49 | 103 | IPR017887 | Transcription factor TCP subgroup |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 290 aa Download sequence Send to blast |
MDPKQPAAQS NAININNSNN NIMVEYNKPV HDQIKDDETK KLQQLVPKRK DRHTKVEGRG 60 RRIRMPALCA ARIFQLTREL GHKSDGETIQ WLLQQAEPSI FAATGTGTIP ASALAAAATG 120 PSVSQQGISV SAGLHQKMDE LGANTVGSAS FSSSSSSTRT SWPMMCGNFG RPHLATAGIW 180 PAPSPVFTSS STNLGSESSN YYLQKIGFPG FDLPAATNMS FTSILGSSNN QQLPGLELGL 240 SQDRGHIGVL NSQALSQIYQ ARIHNQQQHQ QNQQQQQHLS PPEDSQGSGH |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Transcription factor that binds to the site II motif (3'-TGGGCC/T-5') in the promoter of PCNA-2 and to 3'-GCCCG/A-5' elements in the promoters of cyclin CYCB1-1 and ribosomal protein genes. {ECO:0000269|PubMed:12631321, ECO:0000269|PubMed:16123132}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_016484940.1 | 0.0 | PREDICTED: transcription factor TCP20-like | ||||
Swissprot | Q9LSD5 | 2e-63 | TCP20_ARATH; Transcription factor TCP20 | ||||
TrEMBL | A0A1S4B7L6 | 0.0 | A0A1S4B7L6_TOBAC; transcription factor TCP20-like | ||||
STRING | XP_009624132.1 | 1e-170 | (Nicotiana tomentosiformis) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA248 | 24 | 201 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT3G27010.1 | 5e-59 | TCP family protein |