PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_016484521.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | DBB | ||||||||
Protein Properties | Length: 189aa MW: 21121.6 Da PI: 6.5795 | ||||||||
Description | DBB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-B_box | 24.5 | 5.7e-08 | 4 | 35 | 5 | 36 |
zf-B_box 5 kCpeHeekelqlfCedCqqllCedClleeHkg 36 C+ ++++e++ +C ++ lC+ C + H+ XP_016484521.1 4 QCDVCDKEEASVYCSADEATLCQRCDYQVHHA 35 7***************************9743 PP | |||||||
2 | zf-B_box | 30 | 1.1e-09 | 55 | 92 | 3 | 38 |
zf-B_box 3 erkCpeHeekelqlfCedCqqllCedClleeHkg..Ht 38 ++C+ ++e ++ lfC++++ lC++C l++Hk Ht XP_016484521.1 55 SPRCDICQERRALLFCKEDRAILCKECDLHIHKAneHT 92 689*****************************888876 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50119 | 10.765 | 1 | 47 | IPR000315 | B-box-type zinc finger |
CDD | cd00021 | 1.91E-4 | 3 | 33 | No hit | No description |
Pfam | PF00643 | 2.2E-6 | 4 | 34 | IPR000315 | B-box-type zinc finger |
SMART | SM00336 | 2.8E-5 | 4 | 47 | IPR000315 | B-box-type zinc finger |
PROSITE profile | PS50119 | 10.253 | 53 | 100 | IPR000315 | B-box-type zinc finger |
SMART | SM00336 | 1.5E-14 | 53 | 100 | IPR000315 | B-box-type zinc finger |
Pfam | PF00643 | 1.1E-7 | 55 | 93 | IPR000315 | B-box-type zinc finger |
CDD | cd00021 | 2.73E-8 | 56 | 100 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005622 | Cellular Component | intracellular | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 189 aa Download sequence Send to blast |
MKIQCDVCDK EEASVYCSAD EATLCQRCDY QVHHANKLAS KHLRFSLIHP SFKDSPRCDI 60 CQERRALLFC KEDRAILCKE CDLHIHKANE HTKKHNRFLL TGVQLSSVVA SYNYQTSSSS 120 SPTGSAASNY KSCTSSSGIL KSSSTVESTT NFQEGSVSTS SISEYLIETL PGWHVEDFLE 180 YPCSSPYEL |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator that acts as positive regulator of seedling photomorphogenesis (PubMed:17965270). Acts downstream of COP1 and play an important role in early and long-term adjustment of the shade avoidance syndrome (SAS) responses in natural environments (PubMed:21070414). {ECO:0000269|PubMed:17965270, ECO:0000269|PubMed:21070414}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG975440 | 6e-71 | HG975440.1 Solanum pennellii chromosome ch01, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016484521.1 | 1e-138 | PREDICTED: B-box zinc finger protein 20-like | ||||
Swissprot | Q9LQZ7 | 6e-69 | BBX21_ARATH; B-box zinc finger protein 21 | ||||
TrEMBL | A0A1S4B6L6 | 1e-137 | A0A1S4B6L6_TOBAC; B-box zinc finger protein 20-like | ||||
STRING | XP_009621729.1 | 1e-136 | (Nicotiana tomentosiformis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA1463 | 23 | 64 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G75540.1 | 2e-65 | salt tolerance homolog2 |