PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_016483582.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | bZIP | ||||||||
Protein Properties | Length: 509aa MW: 57442.4 Da PI: 7.0201 | ||||||||
Description | bZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | bZIP_1 | 33.2 | 1.1e-10 | 218 | 253 | 5 | 40 |
CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLea 40 k rr+++NReAAr+sR+RKka++++Le L++ XP_016483582.1 218 KTLRRLAQNREAARKSRLRKKAYVQQLESSRIRLTQ 253 7789***********************985555544 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.20.5.170 | 2.3E-8 | 209 | 260 | No hit | No description |
SMART | SM00338 | 2.9E-8 | 214 | 293 | IPR004827 | Basic-leucine zipper domain |
PROSITE profile | PS50217 | 9.266 | 216 | 260 | IPR004827 | Basic-leucine zipper domain |
SuperFamily | SSF57959 | 2.94E-7 | 218 | 260 | No hit | No description |
CDD | cd14708 | 3.08E-22 | 218 | 270 | No hit | No description |
Pfam | PF00170 | 7.3E-8 | 218 | 256 | IPR004827 | Basic-leucine zipper domain |
PROSITE pattern | PS00036 | 0 | 221 | 236 | IPR004827 | Basic-leucine zipper domain |
Pfam | PF14144 | 7.2E-32 | 309 | 383 | IPR025422 | Transcription factor TGA like domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 509 aa Download sequence Send to blast |
MGFERAFVES SPEQENKLFV GVSYMDSSNK NHDPLESNNQ ISFGGQHQHH QQQFFYNHHQ 60 QQQLQNNNQI SFGMMQQSSS SSSAIPGSLI SKDSAGAYDL GELDQALFQY LDGQEPSSIQ 120 EQRQNSGMRP PTLNIFPSQP MHVEPSTTNK MNTGLVSPAI SGSKRSSQPS MELSNNLKNN 180 DAPSASGPEP PKAAKREGNR KGPTSSSEQD APKTPDPKTL RRLAQNREAA RKSRLRKKAY 240 VQQLESSRIR LTQLEQELQR ARAQGYYFGG NSLLGGEQNL PVNMANMSSD AAVFDMEYAR 300 WLEEHHRLMC ELRNAVQEHF PENELRIYVD NCVTHYDEIM NLKSMLTKSD VFHLVSGMWK 360 TPAERCFMWM GGFRPSELLK IILSQIEPLT EQQLMGICGL QQSTQEAEDA LSQGLEALNH 420 SLSDTIASDA LSCPQNMANY MGQMALAMNK LSTLEGFVRQ ADNLRHQTIH RLHQLLTTRQ 480 AARCFLAIAE YFHRLRALSS LWHARPRQE |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator that binds to as1-like elements (5'-TGACGTAAgggaTGACGCA-3') in promoters of target genes. Regulates transcription in response to plant signaling molecules salicylic acid (SA), methyl jasmonate (MJ) and auxin (2,4D) only in leaves. Prevents lateral branching and may repress defense signaling. {ECO:0000269|PubMed:12777042}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Interaction ? help Back to Top | ||||||
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Source | Intact With | |||||
IntAct | Search Q52MZ2 |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AY998018 | 0.0 | AY998018.1 Nicotiana tabacum TGA10 transcription factor mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009794164.1 | 0.0 | PREDICTED: transcription factor HBP-1b(c38)-like isoform X1 | ||||
Swissprot | Q52MZ2 | 0.0 | TGA10_TOBAC; bZIP transcription factor TGA10 | ||||
TrEMBL | A0A1S4B3T2 | 0.0 | A0A1S4B3T2_TOBAC; transcription factor HBP-1b(C38)-like isoform X1 | ||||
TrEMBL | A0A1U7Y4I8 | 0.0 | A0A1U7Y4I8_NICSY; transcription factor HBP-1b(C38)-like isoform X1 | ||||
STRING | XP_009794164.1 | 0.0 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA2279 | 21 | 45 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G06839.3 | 0.0 | bZIP family protein |
Publications ? help Back to Top | |||
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