PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_016483184.1

Organism

Nicotiana tabacum

Taxonomic ID

4097

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

HD-ZIP

Protein Properties

Length: 267aa MW: 29857.3 Da PI: 6.9081

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_016483184.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	56.6	4.3e-18	116	170	2	56
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 rk+ +++keq +Le+ F+++++++ +++++LA++l+L rqV vWFqNrRa+ k XP_016483184.1 116 RKKLRLNKEQSAILEDSFKEHSTLNSKQKRDLATRLSLRPRQVEVWFQNRRARTK 170 678899***********************************************98 PP
2	HD-ZIP_I/II	117.9	5.8e-38	116	205	1	91
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreel 91 +kk+rl+keq+++LE+sF+e+++L++++K +la++L l+prqv+vWFqnrRARtk+kq+E+d+e L+++y+ lk en+rL++e +eL+ +l XP_016483184.1 116 RKKLRLNKEQSAILEDSFKEHSTLNSKQKRDLATRLSLRPRQVEVWFQNRRARTKLKQTEVDCEILRKCYEDLKVENRRLNTELQELK-SL 205 69*************************************************************************************9.44 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50071	16.601	112	172	IPR001356	Homeobox domain
SMART	SM00389	7.0E-15	114	176	IPR001356	Homeobox domain
SuperFamily	SSF46689	3.38E-17	114	181	IPR009057	Homeodomain-like
CDD	cd00086	2.79E-14	116	173	No hit	No description
Pfam	PF00046	2.0E-15	116	170	IPR001356	Homeobox domain
Gene3D	G3DSA:1.10.10.60	1.0E-16	122	170	IPR009057	Homeodomain-like
PROSITE pattern	PS00027	0	147	170	IPR017970	Homeobox, conserved site
SMART	SM00340	6.1E-15	172	215	IPR003106	Leucine zipper, homeobox-associated
Pfam	PF02183	5.5E-10	172	205	IPR003106	Leucine zipper, homeobox-associated

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 267 aa Download sequence Send to blast
MICNTRLSLS LLGSSGESTT PNDSTIHQHN NKRKSNEDQE LDINPLPSLT LCLSSSAVNS 60 SVISATVSSF SNSSVKRERD ASFEEEVELD TNKVIISPKL DDVDQEQDED HEFGTRKKLR 120 LNKEQSAILE DSFKEHSTLN SKQKRDLATR LSLRPRQVEV WFQNRRARTK LKQTEVDCEI 180 LRKCYEDLKV ENRRLNTELQ ELKSLKMAAP FRVQLSAATL SMCPSCERTY GGGSGGDNSA 240 TKISFSIGDQ KPNFYGSFAN SSAALLS

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	114	120	TRKKLRL
2	164	172	RRARTKLKQ

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. {ECO:0000250}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016483184.1	0.0	PREDICTED: homeobox-leucine zipper protein HAT22-like
Swissprot	P46604	3e-63	HAT22_ARATH; Homeobox-leucine zipper protein HAT22
TrEMBL	A0A1S4B2W3	0.0	A0A1S4B2W3_TOBAC; homeobox-leucine zipper protein HAT22-like
STRING	XP_009783420.1	1e-170	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA290	24	186

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G37790.1	1e-59	HD-ZIP family protein

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Liu T,Longhurst AD,Talavera-Rauh F,Hokin SA,Barton MK The Arabidopsis transcription factor ABIG1 relays ABA signaled growth inhibition and drought induced senescence. Elife, 2017. [PMID:27697148] Song L, et al. A transcription factor hierarchy defines an environmental stress response network. Science, 2017. [PMID:27811239]