PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016483155.1
Organism
Nicotiana tabacum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family bHLH
Protein Properties Length: 443aa    MW: 48634.2 Da    PI: 5.1794
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016483155.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH33.57.5e-11380425655
                     HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
             HLH   6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                     +++Er RR ri +++ +L+el+P+     +k  + a++L  A +YIk+L+
  XP_016483155.1 380 SIAERVRRTRISERMRKLQELVPNM----DKQTNTADMLDFAADYIKELE 425
                     689*********************7....688***************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088814.5374424IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474595.63E-15377436IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.07E-10378429No hitNo description
Gene3DG3DSA:4.10.280.104.1E-14379436IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000109.0E-8380425IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003536.3E-12380430IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 443 aa     Download sequence    Send to blast
MDHRSHQQQQ MTSGLTRYRS APSSYFSSLL SSNNPAAVAS GGGNCGYARD DFEQLLNSRA  60
SNTDIKQVFD RFVANIDPQD SNSNGLIGDT QQNHMSNMNV RSEVVAPMKQ EHEAQRQSHN  120
SQFIAAVKQE TQQNSDYSLV SQMNYQTQAQ QNDNSDLNSA MDNFARFLGA ADSNRLNQTK  180
MDGGFGTGSS NSNLTRYNSS PAGFFAQFDI ENEYGAMRGI GGYGAGGNAA AEASFPTPNR  240
FSSQTALQSG QPPSSGLLAP ISEFGAKSIE EGRAGDESFG KGHKNDDSYM TGFPIPSWDD  300
SQMLTDDFLQ VPEDNEAEPF SNVNASDNQS SEDRARPPTL LSHLSLPQTS AELSAMEKLL  360
QDSVPCKVRA KRGCATHPRS IAERVRRTRI SERMRKLQEL VPNMDKQTNT ADMLDFAADY  420
IKELETQVKA LSERRSKCTC SNK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2127921e-109AC212792.2 Solanum lycopersicum DNA sequence from clone LE_HBa-224N6 on chromosome 12, complete sequence.
GenBankHG9755241e-109HG975524.1 Solanum lycopersicum chromosome ch12, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016483155.10.0PREDICTED: transcription factor bHLH122-like
RefseqXP_016483156.10.0PREDICTED: transcription factor bHLH122-like
RefseqXP_016483157.10.0PREDICTED: transcription factor bHLH122-like
TrEMBLA0A1S4B2V20.0A0A1S4B2V2_TOBAC; transcription factor bHLH122-like
STRINGXP_009785469.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA46052239
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G51140.15e-53bHLH family protein