PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | XP_016483059.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
|
||||||||
Family | ERF | ||||||||
Protein Properties | Length: 429aa MW: 47042.4 Da PI: 6.5238 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 65.3 | 1.3e-20 | 199 | 248 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkr..krfslgkfgtaeeAakaaiaarkkleg 55 +y+GVr+++ +g+W+AeIrdp + +r++lg+f+tae Aa+a+++a+++++g XP_016483059.1 199 RYRGVRQRP-WGKWAAEIRDP-----HkaARVWLGTFDTAEAAARAYDEAALRFRG 248 8********.**********7.....337*************************98 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 2.31E-21 | 198 | 258 | No hit | No description |
SMART | SM00380 | 6.3E-37 | 199 | 262 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 1.11E-22 | 199 | 257 | IPR016177 | DNA-binding domain |
Pfam | PF00847 | 3.4E-14 | 199 | 248 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 25.712 | 199 | 256 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 6.8E-33 | 199 | 257 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.2E-11 | 200 | 211 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.2E-11 | 222 | 238 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 429 aa Download sequence Send to blast |
MCLLIKVANP GESGEHDRIP STGGDSESTT TTTTTTEGGI PQPYEQSFEE MLRQQIQQET 60 EYLMSSSATP MFSGYSQTRE MSAMVTALTH VVSGRRQGEL TYRPEITTSF GGGSPSSSSS 120 GSWAGQKRRR DQEESVAAEQ VQRVYGGFGE FRSGESSSSV KPEEASSMVA PPTTTTAAAQ 180 PTPQSAEGGA EETGERRKRY RGVRQRPWGK WAAEIRDPHK AARVWLGTFD TAEAAARAYD 240 EAALRFRGNR AKLNFPENVR LLPQQQQQYQ PTTRSAISSS SAASQFPLMA AATTPSPFFQ 300 TYQPQQQQQQ PPFQSSEMVR DYWEYSQLLQ NPGDFHAQQS SSSLLEQMLF ASSSMGLLHS 360 HTFPSYSSSS SLATSSSASS PAYPLFYSAQ QSRFFQPPQT SHQNQTSSST SSFPAPFWTS 420 STHYPPSSS |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1gcc_A | 1e-22 | 198 | 259 | 1 | 63 | ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | AJ538424 | 1e-103 | AJ538424.1 Nicotiana tabacum cDNA-AFLP-fragment BC1-M43-024. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_016483059.1 | 0.0 | PREDICTED: ethylene-responsive transcription factor ABR1-like isoform X1 | ||||
TrEMBL | A0A1S4B2I5 | 0.0 | A0A1S4B2I5_TOBAC; ethylene-responsive transcription factor ABR1-like isoform X1 | ||||
STRING | XP_009777816.1 | 0.0 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA4322 | 21 | 40 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G50080.1 | 6e-22 | ethylene response factor 110 |