PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_016483028.1

Organism

Nicotiana tabacum

Taxonomic ID

4097

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

bZIP

Protein Properties

Length: 269aa MW: 30573.3 Da PI: 7.8272

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_016483028.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	44.2	4.3e-14	170	221	5	56
CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkev 56 +++rr+++NRe+ArrsR RK+ ++eL v L +eN++L ++l++ ++ XP_016483028.1 170 RKQRRMISNRESARRSRMRKQRHLDELWAQVVWLRNENHQLLDKLNHSSERQ 221 689******************************************9988765 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00338	7.2E-14	166	230	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	10.254	168	231	IPR004827	Basic-leucine zipper domain
Pfam	PF00170	5.8E-12	170	228	IPR004827	Basic-leucine zipper domain
Gene3D	G3DSA:1.20.5.170	4.6E-11	170	242	No hit	No description
SuperFamily	SSF57959	2.01E-12	170	219	No hit	No description
CDD	cd14702	2.71E-18	171	220	No hit	No description
PROSITE pattern	PS00036	0	173	188	IPR004827	Basic-leucine zipper domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 269 aa Download sequence Send to blast
MRTKDRICNS YPSQAPFTNA KKSSQLRTQA GLASLRICDE KFANATSTVI TNANPDLVFA 60 RLTPAQCRKV KEVGDLMTGV PATEVPVNGG RNYNGPKDLP SAVDEHVAGV YFFSDTTARS 120 TFQLNRLLNP LYHLQITPQV QEFNPQLTCF NSNSTSDEAD EQQLNLINER KQRRMISNRE 180 SARRSRMRKQ RHLDELWAQV VWLRNENHQL LDKLNHSSER QDQVLEENAQ LKKEASELRQ 240 MITDMQLSSP CPSLRALEDE PCSGLSQNE

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	182	189	RRSRMRKQ

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HG975441	1e-170	HG975441.1 Solanum pennellii chromosome ch02, complete genome.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016483028.1	0.0	PREDICTED: uncharacterized protein LOC107803773
TrEMBL	A0A1S4B2L6	0.0	A0A1S4B2L6_TOBAC; uncharacterized protein LOC107803773
STRING	XP_009603686.1	1e-103	(Nicotiana tomentosiformis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA947	24	92

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G30530.1	8e-50	basic leucine-zipper 42