PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_016482997.1

Organism

Nicotiana tabacum

Taxonomic ID

4097

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

NAC

Protein Properties

Length: 319aa MW: 36882.4 Da PI: 8.786

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_016482997.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	161.8	2.5e-50	24	159	2	128
NAM 2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk..kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevls 94 pGfrFhPtdeelv++yLk+kve+kk+++ + ikevdiyk++PwdLpk +v + kewyfFs r +ky+++ r+nr+t sg+Wkatg dk+++s XP_016482997.1 24 LPGFRFHPTDEELVSFYLKRKVENKKIKI-DLIKEVDIYKHDPWDLPKgnTVGDNCKEWYFFSMRGRKYRNSVRPNRVTGSGFWKATGIDKPIYS 117 59*************************.99***********5335555667********************************** PP NAM 95 k........kgelvglkktLvfykgrapkgektdWvmheyrl 128 + ++e +glkk+Lv+y+g+a kg+ktdW+mhe+rl XP_016482997.1 118 SttttsqstDRECIGLKKSLVYYRGSAGKGTKTDWMMHEFRL 159 9776655544445*************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	2.48E-52	21	190	IPR003441	NAC domain
PROSITE profile	PS51005	51.483	23	191	IPR003441	NAC domain
Pfam	PF02365	1.6E-25	25	159	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 319 aa Download sequence Send to blast
MELVENIAAN TNIKAEDEEE MMQLPGFRFH PTDEELVSFY LKRKVENKKI KIDLIKEVDI 60 YKHDPWDLPK GNTVGDNCKE WYFFSMRGRK YRNSVRPNRV TGSGFWKATG IDKPIYSSTT 120 TTSQSTDREC IGLKKSLVYY RGSAGKGTKT DWMMHEFRLP PNWKTSNQQL PNPKNIIPEA 180 EVWTLCRIFK RTSNYKRFTP DWKQPVIKQS FGDASSKACS LQSETSDDHS ININFNKMEF 240 PHKKNNTATG GNYQVDQKTT HYQNSQPIIT MPQSSITSSN SSFWNTSAEE EYLFSDGNWD 300 ELKSVVDLAI DPRSLFGFR

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	2e-48	10	197	1	171	NO APICAL MERISTEM PROTEIN
1ut4_B	2e-48	10	197	1	171	NO APICAL MERISTEM PROTEIN
1ut7_A	2e-48	10	197	1	171	NO APICAL MERISTEM PROTEIN
1ut7_B	2e-48	10	197	1	171	NO APICAL MERISTEM PROTEIN
4dul_A	2e-48	10	197	1	171	NAC domain-containing protein 19
4dul_B	2e-48	10	197	1	171	NAC domain-containing protein 19
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that binds to the 5'- RRYGCCGT-3' consensus core sequence. Central longevity regulator. Negative regulator of leaf senescence. Modulates cellular H(2)O(2) levels and enhances tolerance to various abiotic stresses through the regulation of DREB2A. {ECO:0000269\|PubMed:22345491}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated by H(2)O(2), paraquat, ozone, 3-aminotriazole and salt stress. {ECO:0000269\|PubMed:22345491}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HG975446	3e-49	HG975446.1 Solanum pennellii chromosome ch07, complete genome.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016482997.1	0.0	PREDICTED: transcription factor JUNGBRUNNEN 1-like
Swissprot	Q9SK55	1e-89	NAC42_ARATH; Transcription factor JUNGBRUNNEN 1
TrEMBL	A0A1S4B245	0.0	A0A1S4B245_TOBAC; transcription factor JUNGBRUNNEN 1-like
STRING	XP_009625395.1	0.0	(Nicotiana tomentosiformis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA1697	24	69

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G43000.1	1e-86	NAC domain containing protein 42

Publications ? help Back to Top
Shahnejat-Bushehri S,Nobmann B,Devi Allu A,Balazadeh S JUB1 suppresses Pseudomonas syringae-induced defense responses through accumulation of DELLA proteins. Plant Signal Behav, 2016. 11(6): p. e1181245 [PMID:27159137] Shahnejat-Bushehri S,Tarkowska D,Sakuraba Y,Balazadeh S Arabidopsis NAC transcription factor JUB1 regulates GA/BR metabolism and signalling. Nat Plants, 2016. 2: p. 16013 [PMID:27249348] Shahnejat-Bushehri S, et al. Arabidopsis NAC Transcription Factor JUNGBRUNNEN1 Exerts Conserved Control Over Gibberellin and Brassinosteroid Metabolism and Signaling Genes in Tomato. Front Plant Sci, 2017. 8: p. 214 [PMID:28326087] Sakuraba Y,Bülbül S,Piao W,Choi G,Paek NC Arabidopsis EARLY FLOWERING3 increases salt tolerance by suppressing salt stress response pathways. Plant J., 2017. 92(6): p. 1106-1120 [PMID:29032592] Ebrahimian-Motlagh S, et al. JUNGBRUNNEN1 Confers Drought Tolerance Downstream of the HD-Zip I Transcription Factor AtHB13. Front Plant Sci, 2017. 8: p. 2118 [PMID:29326734]