PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_016482872.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | MIKC_MADS | ||||||||
Protein Properties | Length: 232aa MW: 26600.5 Da PI: 10.0534 | ||||||||
Description | MIKC_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 83 | 1.9e-26 | 10 | 59 | 2 | 51 |
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 +i+n + rqvtfskRrng+lKKA+ELS+LCdaev +iifsst kly+++s XP_016482872.1 10 KIDNITSRQVTFSKRRNGLLKKAKELSILCDAEVGLIIFSSTAKLYDFAS 59 69**********************************************86 PP | |||||||
2 | K-box | 75.8 | 1.2e-25 | 82 | 168 | 10 | 96 |
K-box 10 eeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrk 96 ++ + +q e+a+L+++++ Lq+++R+llGe+L+ +s+k L Le+qL+ sl++iR kK+++l+++i+el +k + +++en +L++ XP_016482872.1 82 PMSEVKFWQGEVANLRQQLNYLQESHRQLLGEKLSGISIKGLTDLENQLDMSLTSIRMKKEQILTDEIKELNRKGNIIRQENIELTE 168 557889****************************************************************************99987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00432 | 5.0E-38 | 1 | 60 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 31.174 | 1 | 61 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00265 | 1.44E-42 | 2 | 77 | No hit | No description |
SuperFamily | SSF55455 | 4.32E-31 | 2 | 81 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.8E-27 | 3 | 23 | IPR002100 | Transcription factor, MADS-box |
PROSITE pattern | PS00350 | 0 | 3 | 57 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 6.0E-24 | 10 | 57 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.8E-27 | 23 | 38 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.8E-27 | 38 | 59 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF01486 | 3.1E-25 | 85 | 169 | IPR002487 | Transcription factor, K-box |
PROSITE profile | PS51297 | 12.979 | 86 | 178 | IPR002487 | Transcription factor, K-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 232 aa Download sequence Send to blast |
MGRGKIAIRK IDNITSRQVT FSKRRNGLLK KAKELSILCD AEVGLIIFSS TAKLYDFAST 60 SMRSVIERYN KVKEEDHKLM NPMSEVKFWQ GEVANLRQQL NYLQESHRQL LGEKLSGISI 120 KGLTDLENQL DMSLTSIRMK KEQILTDEIK ELNRKGNIIR QENIELTERA NLVYQENIGL 180 QKKVCGTRGR NEANETPGYN FINLQLSQPQ GQRNDTSLNA MKLGLQLHYK AD |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5f28_A | 3e-20 | 1 | 74 | 1 | 74 | MEF2C |
5f28_B | 3e-20 | 1 | 74 | 1 | 74 | MEF2C |
5f28_C | 3e-20 | 1 | 74 | 1 | 74 | MEF2C |
5f28_D | 3e-20 | 1 | 74 | 1 | 74 | MEF2C |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016482872.1 | 1e-170 | PREDICTED: MADS-box transcription factor 23-like | ||||
Swissprot | Q6EP49 | 6e-89 | MAD27_ORYSJ; MADS-box transcription factor 27 | ||||
TrEMBL | A0A1S4B1R8 | 1e-169 | A0A1S4B1R8_TOBAC; MADS-box transcription factor 23-like | ||||
STRING | XP_009609340.1 | 1e-149 | (Nicotiana tomentosiformis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA679 | 20 | 56 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G37940.1 | 2e-88 | AGAMOUS-like 21 |
Publications ? help Back to Top | |||
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