PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016482786.1
Organism
Nicotiana tabacum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family HD-ZIP
Protein Properties Length: 207aa    MW: 23578.9 Da    PI: 8.1217
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016482786.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox60.62.4e-1977131256
                     T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
        Homeobox   2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                     rk+ ++tkeq   Lee F++n++++ +++e LA++l+L+ rqV vWFqNrRa+ k
  XP_016482786.1  77 RKKLRLTKEQSFLLEESFRQNHTLNPKQKEALAMQLKLKPRQVEVWFQNRRARSK 131
                     788899***********************************************98 PP
2HD-ZIP_I/II115.92.3e-3777165189
     HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLre 89 
                     +kk+rl+keq+ lLEesF+++++L+p++K++la +L+l+prqv+vWFqnrRAR k+kq+E ++e+Lkr++ +l+e+n+rL+kev+eLr+
  XP_016482786.1  77 RKKLRLTKEQSFLLEESFRQNHTLNPKQKEALAMQLKLKPRQVEVWFQNRRARSKLKQTELECEYLKRWFGSLTEQNRRLKKEVQELRA 165
                     69*************************************************************************************94 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466891.28E-1965134IPR009057Homeodomain-like
PROSITE profilePS5007117.36273133IPR001356Homeobox domain
SMARTSM003892.5E-1675137IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.604.8E-1877131IPR009057Homeodomain-like
PfamPF000461.3E-1677131IPR001356Homeobox domain
CDDcd000865.30E-1577134No hitNo description
PROSITE patternPS000270108131IPR017970Homeobox, conserved site
SMARTSM003401.4E-20133176IPR003106Leucine zipper, homeobox-associated
PfamPF021833.1E-10133167IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 207 aa     Download sequence    Send to blast
MAVMPENSTC LELTISIPGS SSSSSFPSSG EGGGYNLMRE LDINQVPSSG NINEEEISIE  60
EEEESCNINV VNGGRTRKKL RLTKEQSFLL EESFRQNHTL NPKQKEALAM QLKLKPRQVE  120
VWFQNRRARS KLKQTELECE YLKRWFGSLT EQNRRLKKEV QELRAMKVDP PTVLSPHSCQ  180
PRPASTLTMC PHCERVTATI IKDESKI
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
17480RTRKKLR
27581TRKKLRL
3125133RRARSKLKQ
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription repressor that binds to the DNA sequence 5'-CAAT[GC]ATTG-3'. {ECO:0000269|PubMed:10732669}.
UniProtProbable transcription repressor that binds to the DNA sequence 5'-CAAT[GC]ATTG-3'. {ECO:0000269|PubMed:10732669}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016482786.11e-151PREDICTED: homeobox-leucine zipper protein HOX3-like
SwissprotQ0JKX19e-77HOX3_ORYSJ; Homeobox-leucine zipper protein HOX3
SwissprotQ9XH389e-77HOX3_ORYSI; Homeobox-leucine zipper protein HOX3
TrEMBLA0A1S4B1S71e-150A0A1S4B1S7_TOBAC; homeobox-leucine zipper protein HOX3-like
STRINGXP_009600601.11e-146(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA29024186
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G01430.15e-61homeobox-leucine zipper protein 17