PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_016482443.1

Organism

Nicotiana tabacum

Taxonomic ID

4097

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

ZF-HD

Protein Properties

Length: 228aa MW: 25685.6 Da PI: 6.7886

Description

ZF-HD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_016482443.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	ZF-HD_dimer	104.1	8.6e-33	52	107	4	60
ZF-HD_dimer 4 vrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRreveee 60 rY+eClkNhA+ +Gg+avDGCgEf+p+ geegt +alkCaAC+CHRnFHR+eve e XP_016482443.1 52 PRYRECLKNHAVGIGGQAVDGCGEFLPA-GEEGTLDALKCAACNCHRNFHRKEVEGE 107 69***********************9.999*******************9865 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD125774	5.0E-23	36	105	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMs	TIGR01566	6.3E-30	53	104	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
Pfam	PF04770	2.2E-29	53	104	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profile	PS51523	27.19	54	103	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
SuperFamily	SSF46689	4.07E-20	150	226	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	8.8E-31	155	227	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01565	7.6E-24	165	221	IPR006455	Homeodomain, ZF-HD class

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 228 aa Download sequence Send to blast
MEFDEEHEDQ EDEIANISQI PATTENNYQE FGEGGPISQA AATLRKNNVP SPRYRECLKN 60 HAVGIGGQAV DGCGEFLPAG EEGTLDALKC AACNCHRNFH RKEVEGEILN FHHTTPPPIL 120 HHPAHHYPYR YLQRPLALPS VSSREDIEDY VSNPTSSGGG GSGSRKRFRT KFTQDQKEKM 180 FAFAEGLGWR IQKENDAAVQ QFCAETNIRR QVFKVWMHNN KHTLGKKP

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1wh7_A	1e-26	166	223	18	75	ZF-HD homeobox family protein
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Essential protein. Putative transcription factor.
UniProt	Putative transcription factor. {ECO:0000250}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009772007.1	1e-173	PREDICTED: zinc-finger homeodomain protein 2-like
Refseq	XP_016482443.1	1e-173	PREDICTED: zinc-finger homeodomain protein 2-like
Swissprot	Q6YXH5	5e-69	ZHD1_ORYSJ; Zinc-finger homeodomain protein 1
Swissprot	Q9SB61	5e-69	ZHD2_ARATH; Zinc-finger homeodomain protein 2
TrEMBL	A0A1S4B0X3	1e-172	A0A1S4B0X3_TOBAC; zinc-finger homeodomain protein 2-like
TrEMBL	A0A1U7VW40	1e-172	A0A1U7VW40_NICSY; zinc-finger homeodomain protein 2-like
STRING	XP_009772007.1	1e-173	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA518	24	128

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G24660.1	5e-63	homeobox protein 22

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764] Bueso E,Serrano R,Pallás V,Sánchez-Navarro JA Seed tolerance to deterioration in arabidopsis is affected by virus infection. Plant Physiol. Biochem., 2017. 116: p. 1-8 [PMID:28477474]