PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016481779.1
Organism
Nicotiana tabacum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family C3H
Protein Properties Length: 331aa    MW: 37705.7 Da    PI: 7.9755
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016481779.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH277.7e-0988112126
                     --S---SGGGGTS--TTTTT-SS-SS CS
         zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                     +kt+ C  f++ GtC+ G+ C+FaHg
  XP_016481779.1  88 FKTRMCAKFLE-GTCRNGEHCTFAHG 112
                     69*********.*************9 PP
2zf-CCCH25.81.9e-08148170325
                     S---SGGGGTS--TTTTT-SS-S CS
         zf-CCCH   3 telCrffartGtCkyGdrCkFaH 25 
                     +++C+ f+ + +C+yGd+C+F H
  XP_016481779.1 148 MKICKKFYNGEECPYGDKCNFLH 170
                     579******66************ PP
3zf-CCCH36.39.4e-12223249127
                     --S---SGGGGTS--TTTTT-SS-SSS CS
         zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                     +kt+ C+ +  tG+C++ drC+FaHg+
  XP_016481779.1 223 WKTKMCSKWETTGQCPFRDRCHFAHGQ 249
                     8************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1000.101.2E-1484120IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.44E-885118IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.03787114IPR000571Zinc finger, CCCH-type
SMARTSM003560.001187113IPR000571Zinc finger, CCCH-type
PfamPF006428.4E-688112IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.089145173IPR000571Zinc finger, CCCH-type
SMARTSM003560.0027145172IPR000571Zinc finger, CCCH-type
SuperFamilySSF902294.19E-7145172IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.105.0E-8148171IPR000571Zinc finger, CCCH-type
PfamPF006424.9E-6148170IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.3E-17218255IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.49E-10221253IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.07222250IPR000571Zinc finger, CCCH-type
SMARTSM003563.6E-4222249IPR000571Zinc finger, CCCH-type
PfamPF006421.5E-6223249IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 331 aa     Download sequence    Send to blast
MSYSDPPPPP PPFMPMPFAG GDIGEAWPQS PMNHEFPESY SQFDHVPPFK RLRNSDNNSP  60
NSANYTPMNS RVNQLNLIGN KGTSHIFFKT RMCAKFLEGT CRNGEHCTFA HGVEDLREPP  120
PNWQELVREK DRGVVGNWND DQKIIHRMKI CKKFYNGEEC PYGDKCNFLH ERPPKFKTDI  180
PRQRESSAIS IGTTANRSDL EQNEISKHGI ADSDAVRIKP VYWKTKMCSK WETTGQCPFR  240
DRCHFAHGQS ELQAPSGPDL LTNPVPIMPR PFSVPLVELS SANAAVNASI QEEKEDKKIL  300
KWKLTKKIYR IYADWIDDLV PPHLLASKAE S
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009768675.10.0PREDICTED: zinc finger CCCH domain-containing protein 39
RefseqXP_009768682.10.0PREDICTED: zinc finger CCCH domain-containing protein 39
RefseqXP_016481777.10.0PREDICTED: zinc finger CCCH domain-containing protein 39-like
RefseqXP_016481778.10.0PREDICTED: zinc finger CCCH domain-containing protein 39-like
RefseqXP_016481779.10.0PREDICTED: zinc finger CCCH domain-containing protein 39-like
SwissprotQ9LT815e-76C3H39_ARATH; Zinc finger CCCH domain-containing protein 39
TrEMBLA0A1S4AZ340.0A0A1S4AZ34_TOBAC; zinc finger CCCH domain-containing protein 39-like
TrEMBLA0A1U7W3300.0A0A1U7W330_NICSY; zinc finger CCCH domain-containing protein 39
STRINGXP_009768675.10.0(Nicotiana sylvestris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G19360.19e-70C3H family protein