PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016481469.1
Organism
Nicotiana tabacum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family HD-ZIP
Protein Properties Length: 329aa    MW: 37205.1 Da    PI: 4.8317
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016481469.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox59.74.6e-1995148356
                     --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
        Homeobox   3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                     k++++t++q++ Le+ F +++++  e++ +LAk+lgL+ rq+ +WFqNrRa++k
  XP_016481469.1  95 KKRRLTENQVQFLEKSFGEENKLEPERKVQLAKELGLQPRQIAIWFQNRRARWK 148
                     56689************************************************9 PP
2HD-ZIP_I/II129.41.4e-4194185192
     HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelk 92 
                     ekkrrl+++qv++LE+sF ee+kLeperKv+la+eLglqprq+a+WFqnrRAR+ktkqlEk+yeaL+++yd+lk++ ++L ke+e+Lr+e+ 
  XP_016481469.1  94 EKKRRLTENQVQFLEKSFGEENKLEPERKVQLAKELGLQPRQIAIWFQNRRARWKTKQLEKEYEALRNQYDNLKSDYNNLLKEKENLRAEVF 185
                     69**************************************************************************************9985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466894.11E-1985152IPR009057Homeodomain-like
PROSITE profilePS5007117.58990150IPR001356Homeobox domain
SMARTSM003892.0E-1893154IPR001356Homeobox domain
PfamPF000461.7E-1695148IPR001356Homeobox domain
CDDcd000861.50E-1795151No hitNo description
Gene3DG3DSA:1.10.10.603.0E-19100149IPR009057Homeodomain-like
PRINTSPR000316.5E-6121130IPR000047Helix-turn-helix motif
PROSITE patternPS000270125148IPR017970Homeobox, conserved site
PRINTSPR000316.5E-6130146IPR000047Helix-turn-helix motif
PfamPF021833.4E-14150191IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 329 aa     Download sequence    Send to blast
MMAPGMLYSA GAGACASNFD GVLIQKQRVM SSSSSTAKEH LGSLFVPGCS SSYLGSSSMV  60
SFGSVNGGKR SFFDSFDQEE NEADELGEYF HQAEKKRRLT ENQVQFLEKS FGEENKLEPE  120
RKVQLAKELG LQPRQIAIWF QNRRARWKTK QLEKEYEALR NQYDNLKSDY NNLLKEKENL  180
RAEVFQLNDK LLLNEKENGQ LTQRDFQKHS DSSPKETMAD PISRVKMSNV SARVLKEDLS  240
SAKSDVLGSE SPHYTDGVHS SFVKQGDSYV VEPEPSDLSQ DDEENFNKTM LSTANLLAKA  300
EDDDYRVTSS NVSYFGFPVE DQGFGFWSY
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1142150RRARWKTKQ
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754421e-122HG975442.1 Solanum pennellii chromosome ch03, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016481469.10.0PREDICTED: homeobox-leucine zipper protein HAT5-like
TrEMBLA0A1S4AY420.0A0A1S4AY42_TOBAC; homeobox-leucine zipper protein HAT5-like
STRINGXP_009591685.10.0(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA8252495
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G01470.15e-39homeobox 1