PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016480542.1
Organism
Nicotiana tabacum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family WRKY
Protein Properties Length: 327aa    MW: 37179.4 Da    PI: 4.9732
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016480542.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY76.62.8e-24129189259
                     --SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS- CS
            WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnhe 59 
                     dDg+ WrKYGqK++ ++++pr+YYrCt +   gC++ k+v+r +++p  + ++Y+g+H+++
  XP_016480542.1 129 DDGHVWRKYGQKQILDAPYPRHYYRCTNKfdqGCEAIKQVQRIQDNPPQFRTIYQGHHTCT 189
                     8**************************99999***************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.803.0E-24113189IPR003657WRKY domain
PROSITE profilePS5081121.035123186IPR003657WRKY domain
SuperFamilySSF1182904.58E-23124190IPR003657WRKY domain
SMARTSM007741.1E-33128190IPR003657WRKY domain
PfamPF031063.5E-23129188IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 327 aa     Download sequence    Send to blast
MESQWQENSL SDLKMLIKEL NCGQEFTHKL RDVIKQSLVN GDMNMLAENL VGQIMGSFCK  60
TLSILNTSNS NEDSQIPMVA VFPCPKDGRT SPEDSTGSCK KSSAKDRIGC NKKRKISAKT  120
VKETSTLADD GHVWRKYGQK QILDAPYPRH YYRCTNKFDQ GCEAIKQVQR IQDNPPQFRT  180
IYQGHHTCTT YPTASQILLD SSTDYENSSI LLSFNTKDNH YYHPYNFPTF FSTKKETKEE  240
NSPSFFYPNN NQNQISTSDY ILPANDYWTP ATETSGNVMA TALSSASDNV DYISSESVTS  300
THNLEMEMEM EMEMMAGIDF DDLPFEF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6ir8_A1e-18129188968OsWRKY45
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009765461.10.0PREDICTED: probable WRKY transcription factor 70
RefseqXP_016480542.10.0PREDICTED: probable WRKY transcription factor 70
TrEMBLA0A1S4AUY50.0A0A1S4AUY5_TOBAC; probable WRKY transcription factor 70
TrEMBLA0A1U7VKH90.0A0A1U7VKH9_NICSY; probable WRKY transcription factor 70
STRINGXP_009765461.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA42302143
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G56400.15e-31WRKY DNA-binding protein 70