PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016480490.1
Organism
Nicotiana tabacum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family G2-like
Protein Properties Length: 604aa    MW: 68182 Da    PI: 5.9566
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016480490.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like84.51.1e-26212265155
         G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                     k r++Wtp++H++F++a++qL G+ekA+Pk+i+e+m+ +gLt+ehv+SHLQkYR+
  XP_016480490.1 212 KRRVVWTPKMHQNFLQAIQQL-GHEKAVPKKIVEIMNEPGLTREHVASHLQKYRM 265
                     689******************.********************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.40.50.23003.7E-1126168No hitNo description
SuperFamilySSF521724.84E-827154IPR011006CheY-like superfamily
Gene3DG3DSA:1.10.10.602.3E-26210269IPR009057Homeodomain-like
SuperFamilySSF466895.2E-18211269IPR009057Homeodomain-like
TIGRFAMsTIGR015576.5E-25212265IPR006447Myb domain, plants
PfamPF002497.7E-6214264IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 604 aa     Download sequence    Send to blast
MDIQGITANS SLGESTPYSS DIGTKRTCIL LVLDDITCHN IVSDMLHNQT YEVLHVGKTM  60
DTLNAIWERK SILNLVLTNI HRLNTHGVDI LQIIKNKLNL PTILMSPDDT RYENQVQDCS  120
VAAYVVNISD TNEMNKLWQM ALEKEKARKA AVNQEEDDYD NATRLPQNVT ETNTENTSSA  180
DSDVRAHDVK GKRKAYSDIS EENGENRDIE KKRRVVWTPK MHQNFLQAIQ QLGHEKAVPK  240
KIVEIMNEPG LTREHVASHL QKYRMCIKRA QESSAASIYD QILTNDAKEK CFQVQTYLSS  300
LNLNATRGYS RSTQQPFQTH FQQGTGGMNL RQPQMVSFPN MVSFQQQNSF LDFANSRKAE  360
YHSGQIGQQS TFLPRIAHNS NFRVYSDKRK NMLFSIQSGN ANQPANSNSG LDFIGFRLSK  420
DGKSVNFGHK GSSSAVISNN TAYSGLCSSM SEDYIHKQQR SPPFLETPNE NTLIQCSSAP  480
PENFTIFNHP SNTISEQQNL LLFDNAANKI TCQSTEMHVS FIPQEQLSAQ QSSGDLEDYS  540
AILFGDEVSV PPLENSGNYD SRQQLYSVPD LPQEFNSLGT EIDIKCLLEI AENRSSQLFW  600
EERF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1irz_A2e-16210269362ARR10-B
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1191213KRKAYSDISEENGENRDIEKKRR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016480490.10.0PREDICTED: two-component response regulator ARR12-like
TrEMBLA0A1S4AV910.0A0A1S4AV91_TOBAC; two-component response regulator ARR12-like
STRINGXP_009598455.10.0(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA36591620
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G16857.26e-33response regulator 1