PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016480441.1
Organism
Nicotiana tabacum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family B3
Protein Properties Length: 489aa    MW: 54881 Da    PI: 7.0679
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016480441.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B359.65.6e-19130220199
                     EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEE CS
              B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvk 95 
                     f k l++s+v++  ++ lp +f+++h    ++++ ++le+e+g+++e+k+i +k++    l++GW++++ a++L egD++vF+l+  ++f  +v 
  XP_016480441.1 130 FMKLLVRSHVGSCFWMGLPVPFCKNHLP--RKDTPVILESETGEEFEIKYIAEKTG----LSAGWRKYCTAHKLVEGDVLVFQLVAPTRF--KVY 216
                     899********************99953..45567***************777777....***********************9987777..888 PP

                     EE-S CS
              B3  96 vfrk 99 
                     v+r+
  XP_016480441.1 217 VIRA 220
                     8775 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.104.8E-20122221IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019365.1E-22123221IPR015300DNA-binding pseudobarrel domain
CDDcd100172.55E-25128219No hitNo description
PROSITE profilePS5086313.183130221IPR003340B3 DNA binding domain
SMARTSM010199.1E-22130221IPR003340B3 DNA binding domain
PfamPF023621.4E-16130220IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 489 aa     Download sequence    Send to blast
NLQHQVSLTA RPSLTIRISS IATCMDLGRE NFSKQADIQK IVVILQNFLH YLVLVAFHDC  60
LYVPINDINS SIAVPLILEQ AVADAGGKSI ITKQERATAD GSGSATQMKS PIIIRAEEFL  120
SSIGNEYPSF MKLLVRSHVG SCFWMGLPVP FCKNHLPRKD TPVILESETG EEFEIKYIAE  180
KTGLSAGWRK YCTAHKLVEG DVLVFQLVAP TRFKVYVIRA NDLKEVDGAL SLLNLDAPPK  240
QSDAEGASAH NLKKRQKKSL PITVVHRRRR KADLSKQLLA LEAQSGNDSD EVASEILEGS  300
RSSGLAVNFR DIKSLEEFHI LVNGVCIDSE LPEDIRRKYY ELCCNKSAFL HDRLLQGLHC  360
KLVAGVIFEV VNIADAIRAC KLTTQRTEFD IWEKSLKSFE LLGMNVGFLR TRLRWLVSLA  420
FDSEGASDTK RYWEAKNEWS RAEDEMRNLE TKLVELKKAS ETYGADVEAL KSKAESYELM  480
FQGEVNAPW
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1252270KKRQKKSLPITVVHRRRRK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754410.0HG975441.1 Solanum pennellii chromosome ch02, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016480441.10.0PREDICTED: B3 domain-containing protein Os01g0234100-like, partial
TrEMBLA0A1S4AV150.0A0A1S4AV15_TOBAC; B3 domain-containing protein Os01g0234100-like
STRINGXP_009594239.10.0(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA72042328
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G19184.13e-37B3 family protein